Lotus japonicus: 130717013
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Entry
130717013 CDS
T04348
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130717013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
130717013
Spliceosome [BR:
lja03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
130717013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_DCAF4
PRP4
Beta-prop_WDR75_1st
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_WDR41
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_Vps41
WD_LRWD1
eIF2A
Beta-prop_SPT8
WD40_like
Nbas_N
Motif
Other DBs
NCBI-GeneID:
130717013
NCBI-ProteinID:
XP_057423084
LinkDB
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Position
5:complement(31968607..31980911)
Genome browser
AA seq
570 aa
AA seq
DB search
MEVEQENTSAEPTVTASDVSSDHSALPLPVQPVIVPVITPSVVPPLAPIPSIPPSLGIRP
LAPLPLPRAPVIRPPVPQNGEVGSSDSDSDHDDADTTRINKGTGEYEISEESRQVRERQE
KAKQELLLKRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDAEG
QLEKLMKAHEDEEAAASAPKDEAEEELQYPFYTEGSKSLRDARIDIAKYSLVRAASRLQR
AQRRRDDPDEDPDAEMKWALEQAGDLRLEFSEIGDDRPLTGCSFSRDGKRLATCSLTGAS
KLWSMPEIRKTSTFKGHTERATDIAYSPVHNHLATASADRTAKYWNDQGSLLKTFEGHLD
RLARIAFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLAFHHDGSLAASCG
LDSLARVWDLRTGRSILALEGHVKPILGISFSPNGYHLATGGEDNTCRIWDLRKKKSLYT
IPAHSNLISQVKFEPQEGYFLVTGSYDMTAKVWSARDFKPVKTLSGHEAKVTSLDVLGDG
GYIVTVSHDRTIKLWSSNMTNDNEHTMDVD
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggaagtggagcaggaaaatacctcagcagaacccactgtaacagcctctgatgtttca
tctgatcattcagctttgcccctgccagtacaacctgttattgtaccagttattactcct
tctgttgtaccccctcttgctcctattccctcaattcctccctctctgggtatccgccca
ctggcaccgctaccgctaccgcgggcaccggttattcggccacctgtgccgcaaaatggc
gaggttggatctagcgattctgattcggaccatgatgacgcggacaccaccaggattaac
aagggtaccggggagtatgagatatctgaagagagtagacaggtcagggagcggcaggaa
aaagcgaagcaggaactcttgttgaagaggcgtgctgccgcgcttgctgttcctacgaat
gacatggctgtgcgagctcgtcttcgccaccttggtgagccgatcactctctttggtgag
agggagatggagagacgagacaggttgcggatgattatggcaaagctggatgctgaaggt
cagctggaaaagttgatgaaagctcatgaggatgaggaggctgcagcttctgctccgaaa
gatgaggctgaggaagaactgcagtatcctttttacactgaggggtcgaaatctctccgg
gatgctagaattgatattgctaaatattctttagtgagggcagcgtcacgtcttcaacgt
gctcagagaagaagagatgatccggatgaagatccggatgcagagatgaaatgggcattg
gagcaggctggggatttgaggcttgaatttagtgaaattggagatgatcgtccacttacc
ggttgctcattctcacgggatggaaaaaggctagctacctgttctcttactggagcttcc
aagttatggagcatgcctgaaataagaaaaacttctacctttaagggtcatacagagcgt
gccactgatattgcttattctcctgtgcataatcacttggcaactgcctcggctgatcgg
actgcaaagtattggaatgatcagggatctcttttgaagacatttgagggtcatcttgac
cgtcttgcacgcattgccttccatccatcagggaagtacctaggtactgctagttttgac
aagacttggagattatgggacatagaaacaggagaggagttgcttcttcaagaaggccat
agtagaagtgtatatggtttagctttccaccatgatggatcattagctgcgtcatgtgga
ctcgattctcttgctcgtgtttgggacctgcgaactgggagaagtattcttgctcttgaa
ggtcatgtcaaaccgattcttggcattagtttttcacctaatggatatcatttagccacg
ggtggtgaagacaacacttgtcgcatttgggatttaaggaagaagaaatctttgtacacc
attcctgctcactccaatttaatatcccaagttaaatttgagccccaagaaggttacttt
ttggtaactggctcatatgacatgacagctaaggtttggtcagcccgtgactttaagcct
gtgaaaacactatctgggcatgaagcaaaagttacttctttggatgttcttggagatggt
gggtatattgttactgtctcccatgatcgcaccataaagctgtggtcgagcaacatgact
aatgataatgaacacaccatggatgttgactaa
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