Lotus japonicus: 130717105
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Entry
130717105 CDS
T04348
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130717105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130717105
03012 Translation factors [BR:
lja03012
]
130717105
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130717105
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130717105
Translation factors [BR:
lja03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
130717105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
nSTAND3
AAA_22
AAA_19
AAA_11
ATPase
ResIII
T2SSE
AAA_23
Motif
Other DBs
NCBI-GeneID:
130717105
NCBI-ProteinID:
XP_057423200
LinkDB
All DBs
Position
5:65055339..65065436
Genome browser
AA seq
1179 aa
AA seq
DB search
MLPTPQPTSFPNLSSHLPFLPMKDRPYGAVYVPPHHRLRSVVTSANHHSAAAAPVSPKLT
QNPTPLKTPFLEQAPNNTNSRFVSAYDDVVSDDCFDREFQIPLPSSLPSDFPNDNIAEWK
RKLSMLLNDKSKQEVISREKKDRHDFEQIAVLATEMGLYSHKYTKVVVFSKVPLPNYRYD
LDDRRPLREVSMPITLFRQVDAHFEEYLRQKSRVNKSFSDLSLARSSSNGSVGTDEGLFE
QPVLLASSKAVAEKVLLRRSLQMRNQQHAWQESPEGRRILEFRSSLPAYKEKEAILSILS
RNQVVIISGETGCGKTTQIPQFILESEIEAVRGAACNIICTQPRRISAMSVSERVASERG
EKLGESVGYKVRLEGVKGRDTHILFCTTGILLRRLLADRNLEGVTHVIVDEIHERGMNED
FLLIVLRDLLLHRPELKLILMSATLDAELFSSYFNGAPIMNIPGFTYPVRTYFLENILEM
TGYRLTPYNQIDDYGQERMWKMNKQAPRKRKSQIASTVEDAIRAADFKDYSPQTQESLSC
WNPDCIGFSLIEYILCNICENERPGAVLVFMTGWDDISSLKEKLLRNNVLGDPNRVLLLA
CHGSMASSEQRLIFEEPEDGVRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNT
PCLLPTWISKVSAQQRRGRAGRVQPGECYHLYPRCVYDAFAEYQLPEILRTPLQSLCLQI
KSLRLGSISEFLSRALQSPEILAVQNAVEYLEIIGALDESENLTILGRYLAMLPMEPKLG
KMLILGAIFSCLDPILTVVAGLSVRDPFLAPMDKKDLADAAKSQFSGAYSDHLALLSAYE
GWKDADIDLGGYEYCWKNFLSLQSMKAIDALRREFICLLKDIGLVDSNTASYNAWSYDVN
LIRAVICFGLYPGICSIVHNEKSFSLKTMEDGQVLLYSNSVNARETTIPSPWLVFNEKIK
VNSVFLRDSTAVSDSVVLLFGGNLSKGDADNHLKMLGGYLEFFMEPDVADMYLSIRRELD
DFIQSKLLFPRMGMHLYHELLSAVRLLISNDECEGRFVFGRPVLKTLKKSVMVSRPALFS
RIESGPGGENSKSQLQTLLARAGYAKPFYKTEQLMNSQFQATVEFNGMQIIGLPCNNKKS
AEKAAAAEALQWLIGVKQADTEYFKQMSMLLKKSKKDHN
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgctccccactccgcaacccacttccttcccaaacctctcttctcacctcccctttctc
cccatgaaggaccgcccctatggcgccgtttacgttccgccgcaccaccgcctccgctcc
gtcgtcacctccgccaaccaccactccgccgccgccgctcccgtttcccctaagctcaca
caaaaccctaccccccttaaaaccccgtttctcgagcaagctcctaacaacacgaactcg
cgcttcgtttctgcttacgacgacgtcgtttccgatgattgtttcgatcgtgaatttcag
attccactcccttcatcactaccgagtgatttccccaatgataacattgctgagtggaag
aggaaactaagcatgctcttaaatgacaagagtaagcaggaggtgatttcgcgggagaaa
aaggataggcatgatttcgagcaaatagcggttttggcgaccgaaatgggattgtatagc
cataagtacacgaaggttgttgtgttcagtaaggtgccacttcccaattatagatatgat
ttggacgatcgtcgtcccttgagggaggtgagcatgcctatcaccttgtttaggcaagtt
gatgcacattttgaggaatatcttagacagaagtccagggtgaacaaaagcttttcagat
ttgtcacttgcaagatcaagcagtaatggcagtgttggtacagacgaggggctttttgag
caacctgtgctgcttgcatccagtaaggctgttgcagagaaagttctcttgcggagaagc
ttacagatgcgcaatcagcagcatgcttggcaggaatctcctgaaggaagaagaattcta
gaatttcgtagcagcctccctgcttataaagagaaagaagcaatattatccatcttatca
aggaatcaggtagttatcatttctggtgaaacaggttgtggcaagacaacacaaattcca
caatttattttagaatctgagatagaagcagttcgtggagccgcttgcaatattatatgc
acacagccaagacgcatttctgccatgtctgtatctgagagggttgcctcggaaagaggg
gagaaattgggtgaatctgttggatataaagttcgactggagggtgtgaaagggagagat
acccatattctcttttgcaccacaggtatcttactaagaagattactagctgatagaaac
ttagagggggtaactcatgttattgtggatgaaattcatgaacgtgggatgaatgaagat
tttctgcttattgtccttagagatctccttctgcatcgacctgaattgaaactaattttg
atgagtgctaccctagatgcagagctcttctcttcgtactttaatggggctccaattatg
aatattccgggctttacataccctgttagaacttattttttggagaacattctcgaaatg
acgggctatagattgactccttataatcaaattgatgattatggtcaagaaaggatgtgg
aaaatgaacaaacaggctccaagaaagaggaaaagccaaattgcttccactgtagaggat
gcaattagagctgctgatttcaaagattacagcccacagacacaggaatctttgtcatgt
tggaatccagactgtataggttttagtctcattgaatatatcttatgcaatatttgtgaa
aatgaaaggcctggtgctgttttggttttcatgactggatgggatgatataagctctctg
aaagagaagctcctgagaaataatgtattgggagatccaaatcgtgttttgttgcttgca
tgtcatggctcaatggctagttctgagcagaggttaatattcgaagagcctgaagatgga
gttagaaaaatagtgctcgcaacaaatattgctgaaacgagtatcacaatcaatgatgtt
gtttttgttctagactgcggaaaggcaaaagaaacatcatatgatgcactgaataacacg
ccttgtttgcttcctacatggatctctaaggtttctgctcaacaaagaagaggaagagct
ggtcgcgttcaaccgggagagtgttaccatctctatcctagatgcgtatatgatgctttt
gcagagtatcaattgccagaaattttgagaacaccactgcaatctctctgtttacaaatc
aaaagtttaagacttggaagtatatctgagttcttgtctagggctctgcagtctcctgag
atccttgcggtacaaaatgcagttgaatatttagaaataattggtgctttggatgagagt
gagaatctgactattctagggcgctatctagctatgctgcctatggaacccaaacttggc
aagatgctcatattaggtgctatcttcagttgcctggatcccatattaactgttgttgct
ggtcttagtgttagagatcctttcctagcaccgatggataaaaaagatcttgcagatgca
gcaaaatctcaattttccggtgcatacagtgaccacctagcacttctaagtgcttatgag
ggttggaaagatgctgatatagacctgggtggatatgaatactgctggaaaaactttctt
tcattgcaatcaatgaaagctattgatgctcttcgcagggagtttatatgcctgctcaag
gatattggactagttgatagcaacacagccagctacaatgcgtggagctatgatgtgaat
cttatccgggcagttatttgctttggtctatatcctggaatttgttccattgtgcataat
gagaaatcattctcgttgaaaacaatggaggatggtcaagtgctcttatactcgaactcg
gtgaatgctcgggaaactacaattccaagtccatggctagtttttaatgagaagataaaa
gtgaactcagtttttctccgtgactcaacagctgtgtccgactcagtggtgcttctcttt
gggggaaacttgtcaaaaggagatgccgataatcacttaaaaatgttaggaggatatctg
gagtttttcatggaacctgatgttgctgacatgtacctgagtataaggagagaacttgat
gacttcattcagagcaaactactttttcccagaatgggtatgcacttgtatcatgagctc
ctatcagcggtacggttgttgatttccaatgacgagtgtgaaggaagatttgtttttggt
cgcccggttcttaaaacattaaagaaatctgttatggtctcacgtccagcattgttttca
aggattgagagcggacctgggggtgaaaattccaaaagtcagctccaaaccttgcttgca
agagcaggatatgctaaacccttctacaagactgaacagttaatgaacagccagtttcag
gctactgtcgagttcaatggaatgcagataataggcctaccttgtaataataagaagagt
gcagaaaaagccgccgcagctgaggcgctgcagtggctgataggtgtaaagcaagcagac
actgagtatttcaaacagatgtcaatgttgctaaagaaaagtaagaaggatcacaattaa
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integrated database retrieval system
