Lotus japonicus: 130717176
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Entry
130717176 CDS
T04348
Name
(RefSeq) ubiquitin receptor RAD23d-like isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
lja
Lotus japonicus
Pathway
lja03420
Nucleotide excision repair
lja04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130717176
09124 Replication and repair
03420 Nucleotide excision repair
130717176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
lja03051
]
130717176
03400 DNA repair and recombination proteins [BR:
lja03400
]
130717176
Proteasome [BR:
lja03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
130717176
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
130717176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPC-binding
UBA
ubiquitin
Rad60-SLD
UBA_7
UBA_RAD5A
CUE
Rad60-SLD_2
Ubiquitin_2
Dsc3_N
Ubiquitin_4
TECR_N
Crinkler
UBA_3
Permuted_GreAB-C
NQRA_N
Motif
Other DBs
NCBI-GeneID:
130717176
NCBI-ProteinID:
XP_057423296
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Position
5:65826787..65831394
Genome browser
AA seq
405 aa
AA seq
DB search
MKVFVKTLKGSHFEIEVKPQDTVSDVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLE
ENKVAENSFIVIMISKSKTPSGEGSTTSAAPSAKAPQTSAAPTSNPVVSVPLPTPTATGA
PLAPVTAAAPAAPAATPAPSPAPAPISSGTAVREGSDVYGQAASNLVAGSNLEDTIQQIL
DVGGGTWDRDTVVRALRAAFNNPERAIEYLYSGIPEQAEAPPVGRVPASAQPANPPAAAA
PQAAQPAPVTSSGPNANPLDLFPQGLPNVGSGGAGAGSLDFLRNSQQFQALRAMVQANPQ
ILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNPLGQLAGGIPQAITVTPEE
RQAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFDEQ
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgaaggttttcgtcaagactctgaagggctctcacttcgaaatcgaagtcaagccccaa
gacacggtttcggatgtgaagaaaaatattgaaactgttcaaggtgtggatgtctatcct
gccgcgcagcaaatgcttattcatcaagggaaagttcttaaggatggtactaccttggag
gaaaataaagtagctgaaaatagtttcattgtgattatgatttccaagagtaagactccg
tctggtgaaggatctactacttcagctgcaccttcagctaaggctccacaaacaagtgca
gctcctacttcaaaccctgtggtgtcagtgccacttccaactcctactgcaactggggct
ccgcttgcacctgttactgcagctgcacctgcggctccagctgcgactcctgctccatct
ccagctcctgctcctatatcttcgggcacggctgtcagggaaggttctgatgtctatgga
caagcagcatccaatctggttgctggtagcaacttggaagacacaattcagcaaattctt
gatgttggaggagggacctgggatagggatactgtagtccgggctcttcgagctgccttc
aacaaccctgagagagctattgaatatttatattcaggaatccccgagcaagctgaagct
ccacctgtgggccgtgtgcctgcaagtgcacaacctgcaaatcctccagcagctgcagct
ccgcaagcggcacaacctgctcctgttacctcaagtgggcctaatgctaatcctttagac
ctttttccacagggcctcccaaatgttggttctggtggtgctggtgctggctctttagat
tttcttcgcaacagccaacaattccaagccttgcgagctatggtgcaggctaatccacaa
atattgcagcctatgctacaagagcttggcaaacagaatcctcatctaatgagattgatt
cgagatcatcaagctgacttccttcgcttgataaatgagcctgtggaaggtggcgaaggg
aacccattggggcagctggctggtggcataccacaagcaataactgtcacccctgaggag
cgccaagcaattgaacgtcttgaagcaatgggtttcgatcgtgcgattgtattggaggtg
ttcttcgcttgcaacaaaaatgaggaattggctgccaactaccttttagatcacatgcat
gagttcgacgaacaataa
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