Lotus japonicus: 130717356
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Entry
130717356 CDS
T04348
Name
(RefSeq) SWI/SNF complex subunit SWI3A
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
lja
Lotus japonicus
Pathway
lja03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130717356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
130717356
03036 Chromosome and associated proteins [BR:
lja03036
]
130717356
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130717356
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130717356
PBAF complex
130717356
GBAF(ncBAF) complex
130717356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
DUF4428
Motif
Other DBs
NCBI-GeneID:
130717356
NCBI-ProteinID:
XP_057423545
LinkDB
All DBs
Position
1:79598308..79603779
Genome browser
AA seq
565 aa
AA seq
DB search
MEVLKDPNSNPGRTDDSESELELYTIPSSSKWFAWDEIHETERTALKEFFDGTSISRTPK
VYKEYRDFVINKYREDPSRKLTFTEVRKSLVGDVTLLRKVFLFLESCGLINYGVGEAEKE
EEREDEEEGEGERCKVRVEEGAPNGIRVVATPNSLKPLSAPRNAKSGGGGGGSVSGGAGV
KLPPLASFADVYGDLMSAKELNCGICGDKCGFEHYRSTKDNFTICMKCFKNGNYGEKRSV
EDFILNESNENSVKQSTVWTEGETLLLLESVLKHGDDWELVAQSVQTKTKLDCISKLIEL
PFGELMLGSAHRNDNINIANGIVNNAIQVQSSSSDHQETSKTQNQTPELTSEKEPNGDAV
NESPSKRQRVAALSESSSSLMKQVGLISTSVDPHITAAAADAAITALCDENLCPREIFDV
EEDYASSANSLISDSERAHEVEGLEMDRSTQAEKDDRGPKDDIPLPLRLRAGIATALGAA
AARAKLMADQEDREIEHLVATIIEAQIGKLQHKVKHFDELELLMKKEHAEIEELKDSILT
ERIDVLQKTFRSGITRWKDYSYVKS
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggaagtcctgaaagacccgaattcaaacccgggtcggaccgacgattccgaatctgag
ctcgaactctacactattccaagctcttccaaatggttcgcgtgggacgagattcacgaa
acggagagaacagcgttgaaggagttcttcgatggaacctcgatttcaagaacgcccaag
gtatacaaagagtacagggatttcgtgatcaacaagtacagggaagatccttcaaggaag
ctcacgtttaccgaggtgcggaaatcgctggtgggcgatgtcacgctcctccgcaaggtt
ttcctcttcttggagagctgcggtttgatcaactacggcgttggggaggcggagaaggag
gaggagagggaggatgaggaggagggggagggggagaggtgtaaggttagggttgaggaa
ggagcgcctaatgggatccgtgtggtggctacgccgaattcgttgaagcctctttcggcg
cctcgcaatgcgaagagtggtggtggtggtggtggtagtgtgagtggtggtgctggggtt
aagttgccgccgctggcgtcgttcgcggatgtttatggcgatttaatgagtgctaaggag
ttgaattgtgggatttgcggtgataagtgtggttttgaacattacagaagcaccaaggac
aatttcactatttgtatgaaatgtttcaaaaatgggaattatggggagaaaaggtctgtg
gaggatttcatattaaacgagtcaaacgaaaatagtgtcaaacagagcactgtctggact
gagggagaaactcttctccttttagaatctgttttgaagcatggagatgactgggaactc
gttgctcaaagtgttcaaaccaagactaaacttgattgtatttcaaaactcattgagctg
ccttttggggagctcatgttaggctctgctcacagaaatgacaacattaatattgctaat
ggcattgtcaataatgcaatacaagttcagtcatcttcttctgatcatcaagaaacctca
aagacacagaatcaaactcctgagcttacaagtgaaaaagagccgaacggagatgctgtg
aatgaaagtccctcaaaaagacagcgtgttgctgccctttccgagtccagcagttcacta
atgaagcaggtgggtttgatttctacttcggttgaccctcacatcacagctgctgccgct
gatgctgctattacagcactctgtgatgaaaacttgtgtccaagggagatatttgatgtt
gaagaggactatgcttccagtgcaaactctctaattagtgattcagaaagagcccatgag
gttgaaggtttagagatggataggtccactcaggcagaaaaagatgacagaggcccaaag
gatgacataccattgcccctgcgcttaagagctggcattgcaactgctcttggagctgct
gctgctagagctaagttaatggcggaccaggaagacagagagattgaacatttagtggca
actataattgaagcacagattggtaaattgcaacacaaggttaaacattttgacgagctg
gagttgttgatgaaaaaggaacatgctgaaatagaagagctaaaagattctatcttgact
gagcggattgatgtgctgcagaagacatttagatctggaatcactagatggaaggattat
tcttacgtaaaatcttag
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