Lotus japonicus: 130717556
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Entry
130717556 CDS
T04348
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130717556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
130717556
Spliceosome [BR:
lja03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
130717556
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
Motif
Other DBs
NCBI-GeneID:
130717556
NCBI-ProteinID:
XP_057423792
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Position
5:complement(67419679..67424231)
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AA seq
806 aa
AA seq
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MDDRERSGDRRTRDRNSDRHHRSHRDSDDHRHHHRSDRSHKRDHKSRDWEEDREGSRERS
YDRDDTKGKDKVKRDEEEDGMEDSVEPRHSSHSHKRKDREHSEDRERERDDDKRIRVSED
RKRERRRFGDKAKKDEENDDTQFNNGNEEHATASVQNGTTALGLPAVAPTSVPETSLAPT
SSSHIKVSSISTTNENKGVSITRSHEVTGKSSTDGSSSTAGKPGRLNIEVIAKAKLALQK
QKELHEKLKNLPLSNKISTPNNESTVPSLSVEKPSSPAPLASSGPVASMSIFPNAAAATS
TLASPAASGTSAAGVPNYEAVRRAQELAARMGFRQDPQFAPLINMFPGQMVPDVTIPQKP
TKAPVLRLDAQGREIDEHGNVVNVTKPSNLSTLKVNINKQKKDAFEILKPVLDVDPDSNP
HFDPRMGVNKTKLLRPKRNNFLFVEEGKWSKDAETIKLKSQFGEAQAKEQKAKQAQLAKA
KAAPDINPNLIEITERVVIKEKLKDPIPEIEWWDLPLLQSGNYGDIADGSIDEDKLKMEK
ITFYVEHPRPIEPPAEPAPPPPQPLKLTKQEQKKLRTQRRIAKEKDRQEMIRQGVIEPPK
PKVKISNLMKVLGAEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAELREKKERKL
FDDPNTVETLVSLYRINDLSHPKARFRVDVNAQENRLTGCAVISDGMSIVVVEGGSKSIK
RYGKLMLRRINWSDVSKENEENDESDDDKPVNKCVLVWQGSVAKPSFNRFSVHDCITEAA
ARKVFVDAGVPHYWDQAVNYVDDGAV
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggacgatagagagagatcgggggataggagaaccagagatcgtaactccgaccgccac
catcggagccaccgcgattccgatgaccaccgccatcatcaccgttccgacaggtctcac
aagcgcgaccacaaatccagggattgggaagaagatcgagaaggaagcagagagaggtcc
tatgacagagacgacaccaaaggtaaggacaaagtgaagcgtgatgaggaggaggatggc
atggaagattccgtcgagccacgacactcttcgcattctcacaagcggaaggatagggaa
cacagtgaggatcgcgagagggagagggacgacgataagagaattagggtttcagaggat
aggaagagggaacggaggaggtttggggataaagccaagaaggatgaagaaaatgacgat
actcaattcaacaatggcaatgaagaacacgccactgcttcagtacaaaacggcactact
gcattgggattacctgctgtggcgcccacgagtgtgcccgagacatcgttggcccctact
tcttcctcacatatcaaggtatcttcgatttctaccacaaatgaaaataagggagttagt
attaccaggtctcatgaggttactggaaaatctagtacagatgggtcttcttcaactgct
ggaaaacccgggcgcctcaatattgaagtcatagctaaggctaagctggctttacaaaag
cagaaagaattacatgagaagctgaagaatcttccactgtcgaataaaatttctacccca
aataatgaatcaactgtaccctctctcagtgttgaaaagccatcaagtcctgccccctta
gcttcttctgggcctgttgcaagtatgtcaattttccctaatgctgctgctgctacttct
actcttgcaagtcctgcagctagtggtactagtgctgctggtgtacccaactatgaagct
gtcaggcgtgctcaggagcttgcggccaggatggggtttcgtcaagatccacaatttgct
cctcttataaacatgtttcctggtcagatggtaccggatgttacaatcccacagaaaccc
acaaaggcccctgttcttcgtcttgatgctcagggacgggaaatagatgaacatggaaat
gttgttaatgtaactaaaccaagcaaccttagcactttgaaggtcaacattaacaaacag
aagaaagatgcgtttgaaatactgaaacctgtattagatgtcgatcctgattctaatcct
cattttgatccaaggatgggggtcaacaagacaaagctcctgcggcccaaaaggaataat
ttcctgtttgtggaagagggaaaatggtcaaaagatgctgaaacaataaaattgaagagt
caatttggagaagctcaagcaaaggagcagaaggccaaacaagcgcagttggcaaaggcg
aaggctgctcctgatataaatccaaacttaatagaaataacagagagggttgtgattaaa
gaaaaactcaaggatccaattccagaaatcgagtggtgggacttgcctcttttgcaatct
gggaattatggtgacattgctgacggatccatagatgaagataaactgaaaatggaaaaa
atcactttttatgtggagcatcctcgtcccattgagccacctgctgagcctgccccacct
ccacctcaacccctcaagctaaccaagcaagaacagaagaaactccggacacaaaggcgt
atagctaaggagaaagatagacaggagatgataagacagggagtcatagaacccccaaaa
ccaaaggtcaagattagcaatttaatgaaagtacttggtgctgaggcaactcaagatcct
actcggcttgaaaaggaaatacgcagtgcagctgctgagcgtgagcaggcccacatagat
aggaacattgctcgcaagctcactcctgctgagctgcgtgagaagaaggagaggaagctg
tttgatgacccaaatacagttgagacacttgtctcactctacaggataaacgatctctct
catccgaaggcccgctttagagttgatgttaatgctcaagagaaccgtttgactggatgt
gctgtgatcagcgatggtatgagtattgttgtggttgaaggtggaagcaagtcaattaag
aggtatggaaagctcatgcttagacgtatcaattggagtgatgtttcaaaagagaatgaa
gaaaatgacgagtcagatgatgacaagcctgtcaataaatgtgttttggtgtggcaagga
agtgttgccaaaccgagcttcaataggttcagtgttcatgattgcatcactgaagcagct
gctcgaaaagtctttgtggatgctggtgttcctcattattgggatcaagctgtcaactac
gtagatgatggagctgtttga
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