Lotus japonicus: 130717559
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Entry
130717559 CDS
T04348
Name
(RefSeq) uncharacterized protein LOC130717559
KO
K12589
exosome complex component RRP42
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130717559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130717559
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
130717559
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
130717559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
130717559
NCBI-ProteinID:
XP_057423799
UniProt:
I3T9E4
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Position
5:9174925..9182366
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AA seq
286 aa
AA seq
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MVGLSLGERHFIQGGIAQDLRCDGRKRLTYRPIYVETGVIPQAHGSARIRMGATEVIASV
KAELGKPSLLQPDKGKVSIYIDCSSTAEPAFEGRGGDDLSAELSVALQRSLLGAKSGAGA
GIDLSSLIVVEGKICWDLYIDGLVVSSDGNLLDALGAAIKAALSNTGIPRVQVAAGASGD
EKPEVEISDDEFLQFDTSGVPVIVTLTKVGRHSIVDATSEEESQMSSAVSISVNRQGHIC
GITKRGSVGLDPSIVLDMISVAKHVSEQLINKLDSEIASAEAEDDS
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atggtgggtttatctcttggtgagcgacatttcatccaaggtggcattgctcaggatctt
cgctgtgatggtagaaagagattgacttaccggccaatctatgttgaaactggagtgatt
cctcaggcacatggttcagctagaatcagaatgggtgctacagaggtcattgccagtgtg
aaggctgaacttgggaagccaagcttattacaacctgacaaagggaaagtctctatatat
attgattgtagttcgactgcagagccagcttttgagggtagagggggtgatgacttgtca
gcagaactgtctgtagctcttcaacgcagtctcttgggcgctaaaagtggagcaggtgct
ggtattgatctctcctcgctcattgttgttgaagggaaaatttgttgggatctttatatt
gatggacttgttgttagctcagatggaaatttgttagacgcactaggggctgccattaag
gctgctttgagcaatacaggtattccaagagtccaagttgctgctggtgcgtcaggtgat
gagaaaccagaagttgaaataagtgatgatgagtttttgcagtttgacacatctggagtc
cctgttatagttacactgactaaggttgggaggcactctatcgtggatgccacatcagaa
gaggaatcacaaatgagctctgctgtttccatatctgttaataggcaaggtcacatctgt
ggtatcaccaaacgaggaagtgttgggctggatccaagtatcgttcttgatatgatatct
gtggctaagcatgtgagcgagcagttaataaacaaactggattcagaaatagcttctgct
gaagctgaagatgactcatga
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