Lotus japonicus: 130717562
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Entry
130717562 CDS
T04348
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
lja
Lotus japonicus
Pathway
lja04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
130717562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lja04121
]
130717562
Ubiquitin system [BR:
lja04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
130717562
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
F-box
LRR_14
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
130717562
NCBI-ProteinID:
XP_057423802
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Position
5:complement(57125379..57128282)
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AA seq
583 aa
AA seq
DB search
MQRVAFSLPEEVLEHVFSFIDNDKDRSSISLVCRSWYEIERCCRRNVFVGNCYAVSPEMV
VKRFPRVRSVTLKGKPHFADFNLVPDGWGGYVSPWIKAMAAACPSLLEIRLKRMVVTDDC
LDLIAKSFKNFRVLVLISCEGFTTHGLAAIAANCRNLRELDLRESEVEDICGHWLSHFPD
SYNSLESLNISCLSNEVNLPALERLVSRCPNLQTLRLNRAVPLDRLTNLLRGAPQLVELG
TGAYTAEMRPEVLANLTEAFSGCKQLKGLSGFWDVLPSYLPAVYPVCSGLTSLNLSYATI
QSPDLIKLVSQCGSLQRLWVLDYIEDAGLDVLAASCKDLRELRVFPSDPFGLEPNVALTE
EGLISVSEGCPKLQSVLYFCRQMSNAALNTIAQNRPNMTRFRLCIIEPRTPDYLTHQPLD
AGFGAIVQHCKNLQRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVLSGCD
NLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCLVSYGACKLLGQKMPRLNVEVIDER
GPPDTRPESSPVEKLYIYRTISGPRVDMPGYVWTMEDDSAYLK
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgcagagagtagcgttctccttaccggaggaggtactcgagcacgtgttctcgttcatc
gataacgacaaggacaggagctcgatctcgctggtgtgcaggtcatggtacgagatcgag
cgatgttgccggagaaacgtcttcgtcggaaactgctacgccgtcagcccggagatggtg
gtgaagcggttcccgagggtgagatccgtcacgctcaaagggaagccacacttcgctgac
ttcaatctggttcctgacggttggggcggttacgtctcgccatggatcaaggccatggct
gctgcttgtccctcgctgcttgagatcaggctcaagaggatggttgttaccgatgattgc
ttggaccttattgccaagtcgttcaaaaacttcagggtgttggtcctgatctcttgtgag
ggtttcactactcatggactcgctgccattgctgccaattgcaggaatttgagggagctg
gatttgcgggagagtgaagtggaggacatttgtgggcactggctaagccattttccagat
tcctacaattcgttggaatcgctgaacatctcttgcttaagcaatgaggtgaatttgccg
gcgctagagcgcttggttagtaggtgccccaacctgcaaacgctccgccttaatcgtgct
gtgcccttggataggcttaccaatctgcttcgcggggctcctcagctggttgagttgggg
actggagcttacacagctgagatgcggccggaggtcctcgcgaacctgacagaagcgttt
tctggatgtaagcaattgaagggcttgtctggcttttgggatgtgctcccatcctacctt
ccagctgtttatcctgtctgctctgggctgacatcactgaacttgagttatgctaccatc
caaagccctgatcttatcaaacttgttagtcaatgtgggagtttgcagcgtttatgggtg
ttggattacatagaagatgctggccttgatgtgcttgctgcatcatgtaaggatctgagg
gagttgagggtgtttccttcggatccatttgggttagagccaaatgtagcattgaccgag
gaaggtcttatttctgtgtctgaaggctgccccaagctacagtcagttctatatttttgt
cgtcaaatgtccaatgctgccctaaatacaattgctcagaacaggcctaatatgactcgt
tttcgactatgtattattgagcctcgaacccctgattatcttacccaccaacctttggat
gctggttttggagctattgttcagcattgcaagaatctacagcgcctttccctctctggg
cttcttactgaccgtgtcttcgagtatattggtacttatgcgaagaagcttgagatgctt
tctgtagcttttgctggagacagtgatttgggactccatcatgtgctgtctgggtgtgac
aacctcaggaagctggagatcagggactgcccatttggtgataaggccctattggccaac
gctgcaaagctggagacaatgcgatccctttggatgtcctcgtgcctagtgagttatggt
gcatgtaagctgctgggacaaaaaatgccgagacttaatgttgaagtcattgatgaaaga
ggacctccagatacaaggccagagagtagtcctgttgagaagctatatatatacagaacc
atttctgggccaagagtggacatgcctggctacgtgtggactatggaagatgattctgca
taccttaaatga
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