Lotus japonicus: 130717660
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Entry
130717660 CDS
T04348
Name
(RefSeq) serine/arginine-rich splicing factor RS40 isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130717660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
130717660
Spliceosome [BR:
lja03041
]
Common components
Common spliceosomal components
SR proteins
130717660
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
Nup35_RRM_2
RNA_bind
RRM_Nup35
DUF2129
Motif
Other DBs
NCBI-GeneID:
130717660
NCBI-ProteinID:
XP_057423969
LinkDB
All DBs
Position
5:complement(62271976..62276044)
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AA seq
379 aa
AA seq
DB search
MRSIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDADAAIRALDRAEF
GRKGRRLRVEWTKHERGIRKPAAPRRSSATARPSKTLFVINFDTFHTRTRDLERHFEPYG
KIASVRIRRNFAFVQYESEDDACKALEATNNSKLLDRVISVEFAAKDDDDRRNGYSPERG
HDNRHDRSRDGRRSPSPYRRERGSPDYGRGASPYKRERSSPDYGHGRSRSRSPHRRVRAS
PAHGRRSPSPYRRERDGSDLVRDSSRSPFHKERGRTDRSSSLSPKRRGRTSPQNGGDSSR
SPYDPVKATSPENGEIKHSPDARGNPSDYNGYGGGSPDNMREPEPEPEAEPEPRDSPNYG
GPESPMHERYRSQSPPAEE
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctattttctgtggaaattttgaatatgatgcccggcagtcagagttggagcgg
ctttttagacgatatgggaaggttgatagggttgatatgaagtctggatttgcttttatc
tatatggaagatgagagagatgctgatgctgctattcgtgctcttgatcgggcagaattt
ggtcggaaggggcggagacttcgtgtggaatggacaaagcatgagcgtggcatcagaaag
cctgctgctccaagaagatcatcagctactgcgaggccatcaaagactttattcgtgatt
aattttgatacattccatacaagaacaagggacttggagagacactttgaaccgtatggg
aagatagccagtgtgaggatcagaaggaattttgcttttgttcagtatgaatcagaggat
gatgcttgtaaagcactggaagccacaaataatagcaagttattggaccgggttatttct
gttgaatttgctgctaaagatgatgatgataggagaaatggatatagcccagagagaggc
catgataatcgtcatgataggagccgtgatggaaggcgatcacctagtccttatcgcaga
gaaaggggtagtcctgattatggtcgtggggccagtccttacaagagggagaggagcagc
cctgactatggccatggccgcagccgtagtagaagcccccaccgcagagtgcgagctagc
cctgctcacgggcgtagaagccctagtccatatagaagagagagggatggctctgatctt
gttcgtgactccagccgcagtccttttcacaaagagcgagggagaaccgatcggtcttcc
tcccttagtcccaaaagaagagggaggacaagccctcaaaatggtggtgactctagccgt
agtccttatgatcctgtgaaggctactagccctgaaaatggcgagatcaaacatagtcct
gatgcaagagggaatcccagcgattacaatggatatggaggagggagcccagataatatg
cgtgagcctgaacctgagcctgaggccgagcctgagcccagggacagtcccaactatggt
ggtcctgaaagtcccatgcatgaacgataccgcagccagtcaccccctgcagaagaatga
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