Lotus japonicus: 130717712
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Entry
130717712 CDS
T04348
Name
(RefSeq) uncharacterized protein LOC130717712 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130717712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
130717712
Spliceosome [BR:
lja03041
]
Complex C
Other components
Step II factors
130717712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_SPT8
Beta-prop_EML
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_Vps41
Beta-prop_WDR75_2nd
eIF2A
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
130717712
NCBI-ProteinID:
XP_057424033
LinkDB
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Position
5:41395053..41398941
Genome browser
AA seq
584 aa
AA seq
DB search
MDLINQYSDDQNDDDPNPNPPEAAEKEGDSSPPRLLPARSAAPKVDDTMLALTVADKKTL
SKPIDPTQHAIAFNPTYDQLWAPIQGPAHPYAKDGIAQGMRNHKLGFVEDASVEPFLFDE
QYNTFHKFGYAADPSASNYVGDLDALNRNNAASVYNIPHREQKKRRIEAKKNKEEGDSDN
EGDGEGGEIENPATDAWLLKNKKSPWAGKKEGLQGELTEDQKKYAEEYAKKKEDEKSGFG
GEKAEVVKDKSTFHGKEERDYQGRSWIAAPKDAKKNNDHCYIPKRLVHTWSGHTKGVSAI
RFFPKSGHLILSASMDTKVKIWDVLNSGKCMRTYMGHSKAVRDICFSNDGSKFLSASYDK
NIKYWDTETGQVISTFTTGKMPYVVRLNPDEDKQNVLLAGMSDKKIVQWDMNTGQITQEY
DQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSITLHPNAN
WLAAQSLDNQILIYSTREKFQLNKKKSFRGHVTGHACQVNFSPDGRFVMSGDGDGKCWFW
DWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atggatctcatcaaccaatactcagatgaccaaaacgacgacgacccaaaccctaacccg
ccggaggcggctgagaaggagggagattcctccccgccccgcctcctccccgcccgttcc
gccgcccccaaggtagacgacaccatgctggccctcaccgtcgccgacaagaaaaccctc
tccaaacccatcgaccctacccagcacgccatcgccttcaaccctacctacgaccagctc
tgggcacccatccagggccctgcccatccctacgccaaggatggcatcgcacaaggcatg
cgcaaccacaagctcggcttcgtcgaagacgcctccgttgaacccttcctattcgatgaa
cagtacaacacctttcacaagttcggctacgctgcggatccgtctgcttccaattatgtt
ggtgatctcgacgcgcttaaccggaacaatgcggcgtctgtctacaacatcccccaccgc
gagcagaagaagcggaggatcgaggccaaaaagaataaggaagaaggagatagtgacaat
gagggtgatggtgagggcggagagattgaaaacccggctaccgatgcgtggttgttgaag
aataagaagagcccttgggcggggaagaaggaagggttgcagggtgagctgacggaggat
cagaagaagtacgcggaagagtatgcgaagaagaaagaggacgagaagagtgggtttgga
ggggagaaggctgaggttgttaaggataagagcactttccatgggaaggaggagagggat
taccagggtaggtcttggattgcagctccgaaagatgcaaagaagaataatgatcattgt
tacataccaaagagattggttcacacgtggagtgggcatacgaagggggtttccgcgatt
cggttcttccccaagtctggacatttgattctgtctgccagcatggataccaaggttaag
atttgggatgttctcaattctgggaaatgtatgaggacttacatgggacactcaaaagcg
gttcgggatatttgtttcagcaatgacgggtcaaagtttttgagtgcgagttatgacaag
aatatcaagtattgggacacagaaacagggcaagtgatatccactttcactaccgggaag
atgccttatgttgtgaggcttaacccggatgaggataagcagaatgtgttgttggctggt
atgagtgataagaagattgttcagtgggatatgaatacggggcagataactcaagagtat
gatcagcatttgggggctgtgaataccattacttttgttgataacaatagaagatttgtt
acttctagtgatgataagtccctcagggtgtgggagtttggtattcctgtggttataaag
tatattagtgagccccacatgcattctatgccgtccataacgcttcacccgaatgccaat
tggctcgctgcgcagagcttggataaccagatacttatttatagcaccagggagaagttc
cagcttaacaaaaagaagagttttcgtggacatgtcactggtcatgcctgtcaggtcaat
ttttcgcccgatggacgctttgtcatgtcaggtgatggtgatggtaagtgttggttctgg
gattggaagagttgcaaagtcttcagaactctcaagtgtcacgaaggtgtttgcattggt
tgtgaatggcatccccttgaacagagcaaggttgcaacatgcggctgggatggattgata
aagtactgggactag
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