Lotus japonicus: 130717880
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Entry
130717880 CDS
T04348
Name
(RefSeq) transcription initiation factor TFIID subunit 4b-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
lja
Lotus japonicus
Pathway
lja03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130717880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
130717880
03036 Chromosome and associated proteins [BR:
lja03036
]
130717880
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
130717880
Coactivators
SAGA/TFTC/STAGA complex
130717880
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
130717880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
Motif
Other DBs
NCBI-GeneID:
130717880
NCBI-ProteinID:
XP_057424254
LinkDB
All DBs
Position
5:complement(5327440..5335300)
Genome browser
AA seq
909 aa
AA seq
DB search
MDPSIVKLLEDDEDETMHSRVDVEAFQAALNRDIGGDASTSQLSGSDSVLSQENNNTVSQ
SLPQWPTSSLDSQTDSQNQEPKSVVQEEQPSEMELKQPVPLVEQLQHVASQDVNNALLSQ
KQSQDECHQVPTVQVSLQNSQASGSQNSGKDPVLNNEVVKTHNPSSESQYAKLQQMSNQQ
ATVTEQPNNQTNRGNQVPFGLLLPVLIPQLAKDKAMQLQTLFAKLKKDEIQKSDFVRVMK
NIVGEQMLRLALVKVQSQTRSNQEPAGQQHPVRTQTVSSGVRHVNDPHASAQMHQRSMAA
DQNRMTSSAVQIMERNARKSQELDVKIESQGLQSSQLPFSRNAVSQETERSSVHIQGLNK
QQQQHIHFPSAYGSSNDSYNPFSGASSGSNSFIKPQQQDSHMSQIPHQSISSNHLGGTTH
MIGIPKLEQQNSLNDSKKLGGSVCAAVNRAASQQTSNAWQPPTNKEQNLGFMSSASYVKK
EPGDLSTEQQHRHNLSKLHGLPSVNSAQVEKGGANQRTVMDEFSRGLPASTSTPPTTSVM
TQLDPNVSTPSNVSGVIARTPLKKPPLAQKKQLDVPGSSPPPPSKKQKSSGGSVEQSIEQ
LNDVTAVSGVDLREEEEQLFSGQKEDSRVSEASRKAVQEEEERLILQKAPLQKKLIDIMA
KCGLKGMSNDVERCLSLCVEERMRGLISNLIRLSKQRVDVEKTRHRTIVTSDVGQQILTI
NRKVREEWEKNLAEEKLRKLNDVESNAGDDGDAEKDESRSKSTKVNKEEDGKLRTNAANV
AARAAVGGDDMLSKWQLLAEQARQKREEAMDTSSGSQPSNDVNPKSLSTSGRGTKDDQEG
ERKGSTAFLAASGSAGKHGRNHAVASQARVARSISVKDVIAVLEREPQMSKSPLVHRLYE
RIHSDAPAE
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggacccatctatagtgaaacttcttgaagatgacgaggatgaaacaatgcattcgcgg
gtggatgtggaagctttccaggctgctctaaatagagatattggaggagatgcatctact
tctcagctttctggttcagattcagttttgtctcaagaaaacaataatacagttagtcag
tcattaccccagtggccaacttctagccttgacagccaaactgacagtcaaaatcaagag
cctaaatctgtagtgcaggaagagcaaccttctgagatggaactgaagcaacctgtacct
cttgtggaacaactgcagcatgttgcttcacaggatgtaaataatgctctgttgtcacag
aaacaatctcaagatgaatgtcaccaagtgccgactgtacaagtttccctccaaaattct
caagcaagtggaagtcagaattctggaaaagatccagtccttaataatgaagtagtcaaa
acccataaccccagtagtgaatctcagtatgccaagttgcagcagatgagtaatcaacag
gctacagtcaccgagcagccaaacaaccaaactaatcgtggtaatcaagtaccatttggt
ctgttgctacccgtcttgattccccaacttgccaaagacaaagccatgcaacttcaaact
ctatttgctaaactgaagaaagatgaaatacagaaaagcgattttgtgcgggtgatgaag
aatattgttggggagcagatgcttagactagcattagtaaaagtgcaatcccagacaagg
tcaaaccaggaacctgctgggcagcagcaccctgtaaggacacaaactgttagttcaggg
gtaaggcatgtgaatgatccccatgcttcagcacagatgcatcagagaagcatggctgct
gaccaaaatcgaatgacgtcctcagcggtccaaattatggagagaaatgctaggaaatct
caggaattggatgttaaaatagaatctcaaggattgcaatcaagccaattgccattttca
cgtaatgctgttagccaagaaacagaaagatcatcagttcacatacaagggcttaataag
cagcagcaacaacatatacactttccatcagcatatggaagtagtaatgatagttataac
cctttttctggcgcaagcagtggttccaattcatttattaaaccacagcaacaagattca
catatgagtcaaattccacatcaaagcattagttcaaatcacttaggtgggacaacacat
atgataggtataccaaagcttgaacagcagaattctttaaatgactccaagaaactaggt
ggatctgtgtgtgctgctgtaaacagagcagcatctcagcaaacttcaaatgcctggcaa
ccaccaacgaacaaagaacaaaatttgggctttatgtcgtctgcttcttatgtcaaaaag
gagccaggtgacttgtctacagagcagcaacataggcataatttgtctaaattgcatgga
ctgccttctgttaattctgcacaggttgaaaagggtggtgctaatcaaaggactgtaatg
gacgagttttcaagaggtcttcctgcatcaacaagcacgcctcctacaacttctgtaatg
acccaactagaccctaatgtctctaccccatcgaacgtatctggagttattgcaaggaca
cctcttaaaaagcctcctcttgcccagaagaaacaacttgacgtgcctggttcctcacct
cctccgccaagtaaaaaacaaaaatcgtctgggggatctgtagaacaaagcattgaacag
cttaatgacgtgactgctgtcagtggagttgatcttagggaagaggaagagcagctattt
tctgggcagaaagaggatagtcgagtttcagaagcatctcgaaaagctgtgcaagaagag
gaggaaaggctgattttgcagaaagctccattgcaaaagaagttgattgacattatggcc
aagtgtggcttgaagggtatgagcaatgatgtggagagatgcttgtcactgtgtgtagag
gaaagaatgcgtggactcataagtaacctgattagactgtcaaaacagcgggttgatgtt
gagaagacaagacatcggacaattgtcacctcagatgttgggcagcaaatactgacaata
aataggaaagtaagggaagagtgggagaaaaatctggcagaagagaagcttcggaaacta
aatgatgttgagagcaatgctggagatgatggtgatgcggagaaggatgagagtcgttct
aaatcgacaaaggtgaacaaggaagaggatggcaagctgaggacgaatgctgcaaatgtt
gctgcccgcgctgctgttgggggggatgatatgctctcaaagtggcaacttctggctgag
caagccaggcagaaacgtgaagaggcgatggacacgtcatccggttcgcagccatcaaat
gatgtgaacccgaaatccttatcaacatctggaagaggtacaaaggatgaccaagaaggg
gagagaaaaggttctactgcttttcttgcagcttcaggttctgctggaaaacatgggaga
aatcatgctgttgcatctcaagctagggtagctcgaagcatctctgtgaaggatgtaatt
gcagtcttagagagggaaccccagatgtctaaatcaccactcgtacatcgcttgtatgaa
agaattcattctgatgctccagctgaataa
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