Lotus japonicus: 130717908
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Entry
130717908 CDS
T04348
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
lja
Lotus japonicus
Pathway
lja03013
Nucleocytoplasmic transport
lja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130717908
03015 mRNA surveillance pathway
130717908
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130717908
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130717908
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
130717908
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DsrH
Motif
Other DBs
NCBI-GeneID:
130717908
NCBI-ProteinID:
XP_057424292
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All DBs
Position
5:complement(15074680..15080739)
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AA seq
504 aa
AA seq
DB search
MAESSATATPTVAADTPTVATDSPTVATATAAPPAHKSWADEADEEASASSTATSSINLD
GLAIDETKKSPKLLDDPDDSNIQAVSSGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKP
SKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELA
IQNIEVLRKMGKYTGISSECAVPMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLG
VARLKILVFDEADQMLAEDGFQDDSLRIMKEIEKLNSGCQVLLFSATFNDKVKNFVSKVV
KKDHNQLFVRKEELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSA
KMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVI
NYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIENHFG
THVTEVREKSTEDFKACLKEAGLI
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggccgaatcttccgccaccgccacccccaccgtcgccgccgacacccccaccgtcgca
accgactcccccaccgtcgccaccgccaccgctgctccgcctgcacacaaaagctgggct
gacgaagccgacgaagaagccagtgcctcgtcgaccgcaacctcatccatcaacctcgac
ggattagcgatcgacgagaccaagaagtcacccaagctgttagacgatcccgacgactcc
aatatacaagcggtttcctccggcgacactccgtatacctcggcggcgacgtttgaagac
ttgagtctctcgccggagctggtgaagggactttacgtggagatgaagttccagaagcct
agcaaaatccaaggcataagcttgcccatgatcctgagccctccacatagagacttgatc
gcacaggctcataatggttccggcaagaccacttgttttgtgcttgggatgcttagtcgt
gttgatcccaagttgcaggctccccaagccctctgcatttgccccaccagggagttagct
attcagaatattgaggttttgcgaaagatggggaagtatactgggattagttcagaatgt
gctgtgcccatggacagcagggatgtgattccgatcaacaaacgtccgccagttatggct
cacgtggtcattgggactcctggcaccattaagaagtggataagttttaagaaactcggg
gtggcgaggttaaagattcttgtttttgatgaggctgatcaaatgcttgctgaggatgga
tttcaagatgattctttgaggataatgaaagaaattgaaaaattgaattctggctgtcag
gttcttttgttttctgctactttcaatgataaagtcaagaactttgtttcaaaggtagtt
aagaaggatcacaatcaactttttgtgaggaaagaagaactatctttagatgcagtgaag
caatataaagtgcgttgtcttgatgaactctctaagattgaagtgatacgggattacata
tttgaaaatggagagaacatggggcaaactattatatttgtacgcacaagaaatagcgca
aagatgttgcataaagcacttgttgatttgggctacgaggttactgccatacaaggtgct
cttaataatgaagatagagacaagattgtcaaggagttcagagatgggttaactcaggtt
ctgatatcaaccgatgttcttgcccgcggctttgatcaacaacagattaatttggttatc
aactatgatcttccggtgaaacacactgctgagtatacccgtgaacccgagcctgattat
gaggtgtatttgcacagggttggtagggctgggcgttttgggcgtaagggggctgtattt
aacctgatatctgatgaaagggatgcgaacatcatgtcaaagattgaaaaccatttcggc
acccatgtaactgaggtgcgagaaaagagcactgaagactttaaagcatgtctcaaggaa
gctggtttgatatga
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