Lotus japonicus: 130717910
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Entry
130717910 CDS
T04348
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130717910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
130717910
03041 Spliceosome [BR:
lja03041
]
130717910
03036 Chromosome and associated proteins [BR:
lja03036
]
130717910
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
130717910
Spliceosome [BR:
lja03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
130717910
Complex B
130717910
Complex C
U2 SnRNP specific factors
130717910
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
130717910
TFTC complex
130717910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
130717910
NCBI-ProteinID:
XP_057424294
LinkDB
All DBs
Position
5:67285975..67290719
Genome browser
AA seq
1216 aa
AA seq
DB search
MYLYSLTLQRPTGIVCAINGNFSGGKVQEIAVARGKVLDLLRPDDNGRIQTILSVEVFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILDYNKEKNVFDKVHQETFGKSGCRRIVPGQYL
AVDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTLVFSICGVDCGFENPI
FAAIELDYSEADQDSTGMAASEAQKHLTFYELDLGLNHVSRKWSDQVDNGANLLVTVPGG
ADGPSGVLVCAENFVIYKNQGHPDVRAVIPRRADLPAERGVLIVSAAMHKLKTMFFFLLQ
TEYGDIFKVTLDNDGDHVSELKIKYFDTIPVTASMCVLKSGFLFAASEFGNHALYQFKAI
GDDDDVEASSATLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPVMDMKVSNLFEEETPQ
IFTLCGRGPRSTLRILRTGLAVSEMAVSRLPGVPSAVWTVKRTVFDEFDVYIVVSFTNAT
LVLSIGETVEEVDDSGFLDTTPSLAVSLIGEDSLMQVHPNGIRHIRSDRRVNEWRTPGKR
TISKVGSNRLQVVIALSGGELIYFEVDVTGTGQLLEVDKHEMSGDVACLDIAPVPEGRQR
SRFLAVGSYDKTIRILSLDPDDCMQTLSVQGVSSPPESLLFLEVQASVGGEDGADHPASL
FLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFPIVVRGKRAMLCLSSRPWLGY
IHQGHFLLTPLSYETLEYAASFSSDQCVEGVVSVAGEALRIFTIERLGETFNETVIPLRY
TPRKFVLQPKRKLLVMIESDQGAFTAEEREAARRECFEAAQAGENGNGNADQMENGGEDE
DRDDPLSDEHYGYPKAESDKWVSCIRVLDPRSGTTTCLLELQENEAAFSICTVNFHDKEY
GTLLAVGTAKGLQFLPKKSLAAGFIHIYRFVDEGRSLELLHKTQVEGVPLALCQFQGRLL
AGIGPVLRLYDLGKRRLLRKCENKLFPNTIVSIQTYRDRIYVGDIQESFHYCKYRWDENQ
LYIFADDCVPRWLTASYHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGRIKWEQG
KLNGAPNKMEEIVQFNVGDVVTSLQKASLIPGGGECIVYGTIMGSIGALHAFTSRDDVDF
FSHLEMHLRQDYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRT
PAEILRKLEEVRNKII
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgtatctatacagtctcaccctacagcgacccaccggcatcgtctgcgccatcaacggc
aacttctccggcggcaaggtacaagaaatcgccgtcgccagaggcaaggttctcgatctc
ctccgccccgacgacaacggcaggatccaaaccatcctctccgttgaggtcttcggcgcc
atcaggtccctcgcccagttccgcctcaccggcgctcagaaggactacatcgtcgtcggt
tccgactccggcagaatcgtcatcctcgactacaacaaggagaagaatgtcttcgacaaa
gtccaccaggaaacgttcggtaaatctggctgccgacgcatcgtcccggggcagtacctc
gccgtggatcccaaaggcagggccgtcatgatcggtgcttgtgagaagcagaagctggtt
tatgtgctgaatagggatactgctgctaggttaacgatttcttcccctttagaagctcat
aagtctcatactttagttttttccatttgtggggttgattgtggttttgagaaccccatt
tttgctgctatagagttggattactctgaggctgatcaggattctactggtatggctgct
tctgaagctcagaagcatttgactttctatgagcttgatttgggtctcaaccatgtttct
aggaagtggtctgatcaggttgataatggtgctaatttgcttgttactgttcctggtggt
gctgatggccctagtggggtgcttgtttgtgctgagaattttgttatttataagaatcag
gggcatcctgatgttagggctgtgattcctcgacgtgctgatttgccggctgagcgtggg
gttcttattgtgtcggctgccatgcataagctcaagaccatgttcttcttcctgctgcag
actgagtatggggacatttttaaggtcaccttggataatgatggtgaccatgtatctgag
ttgaagattaagtattttgatactattcccgttacggcttccatgtgtgtgctgaagtca
gggttcttgtttgcagcctctgagtttggaaaccatgctttgtatcagtttaaggcaata
ggggatgatgatgatgtggaggcttcgtctgctacgctgatggaaactgaagaaggtttt
cagccggtgtttttccagcccagaaggctgaagaaccttgttaggattgatcaggttgag
agtttaatgccagttatggatatgaaggtcagtaacctctttgaagaggaaactcctcag
atttttacactctgtggccgtggtcctcgatccactctgaggattttgagaactggttta
gctgttagtgagatggcagtttccaggcttcctggtgtacctagtgctgtttggactgtt
aagaggactgtgtttgatgagtttgatgtgtatatcgttgtttcgttcacaaatgccacg
cttgtgctttccattggtgagacagttgaagaagttgatgacagtggatttcttgacact
actccctccctcgccgtgtctttgataggtgaagattctctgatgcaggtccacccgaat
ggtattaggcacattaggtcggataggcgtgtgaatgagtggagaactcctggaaagagg
acgatttcaaaagtaggatcaaacagacttcaagtggttattgcactgagtggaggggag
cttatctattttgaagtggatgtaactggtactggtcagttgttggaggtggacaagcat
gaaatgtctggagatgttgcttgtttggacattgctccagtgcctgaaggcaggcaaagg
tctcgttttcttgcagttggctcatatgacaagacaattcgaatcttatcactggatccc
gatgattgtatgcagacactgagtgtacaaggcgtttcttcacctccagagtctctactt
ttcctcgaagtccaagcatctgttggtggtgaggatggtgcagatcatcctgctagcctt
ttcctgaacgctggtttacagaatggtgtcttatttaggactgtggtggatatggttaca
ggtcagctttctgattctcgttccagattcttaggattgagagccccaaaactttttccc
attgttgtaagagggaagcgtgctatgctttgcttatcaagtcgaccttggctaggttat
attcaccaaggacatttccttttaacacccctttcatatgaaacccttgaatatgctgcc
tctttttcatctgaccaatgtgtggaaggtgtagtttctgttgctggtgaggcattgaga
atttttaccattgaaagattaggagaaacattcaatgagactgtaattccgctaagatac
acaccaaggaaatttgtgctacaacccaaacggaagcttttggtgatgattgagagcgat
caaggagcttttacggcagaagagcgtgaagctgcaaggagagaatgttttgaggctgct
caagctggggaaaatgggaatggaaatgcagaccaaatggagaatggtggggaggatgag
gatagagatgatccgctctcggatgagcattatggttatcctaaagctgaatcagacaag
tgggtttcctgcatcagagttcttgatcctaggtcaggaactacaacctgtctcttggag
cttcaggagaatgaggccgcattcagcatatgcacagtaaatttccatgataaggaatat
ggaactcttttagctgttggcactgcaaagggactgcaatttttgcctaaaaagagttta
gctgccggatttattcatatatataggtttgtagacgagggaagatctcttgaacttctt
cacaaaacccaggttgaaggtgttcctcttgctctatgtcagtttcaaggaagattactt
gcaggaataggacctgtgctcaggctatatgatctaggaaaaaggagattattaagaaaa
tgtgagaataagctattcccaaacacaattgtctctattcagacatatcgtgatcgaatt
tatgttggtgacatccaagagtctttccattattgcaagtatagatgggatgaaaaccaa
ctttacatatttgctgatgattgcgttccaagatggcttactgcttcataccacatagat
ttcgacaccatggctggtgcagacaagtttggaaatatctattttgtgcggttgccgcag
gatgtttctgatgagatagaagaagatcctactggtgggaggatcaagtgggagcaggga
aagctgaatggagctcccaataagatggaagaaattgtacaatttaatgttggtgatgtg
gtcacaagcttgcaaaaggcatctcttatacctggtggtggagagtgtattgtatatgga
acaattatgggaagtattggggcattgcatgcttttacttcacgtgatgatgttgatttc
ttttctcatttggagatgcatctgaggcaggactatccacctttgtgtggaagagatcac
atggcttatagatctgcctattttcccgttaaggatgtgattgatggtgatctatgcgag
caattcccaacattgccaatggatttgcagagaaaaattgctgatgaattagacagaact
ccggcagagatactgagaaaactagaggaagtgcgaaataagattatttaa
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