Lotus japonicus: 130718015
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Entry
130718015 CDS
T04348
Name
(RefSeq) vacuolar protein sorting-associated protein 35B-like
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
lja
Lotus japonicus
Pathway
lja04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
130718015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lja04131
]
130718015
Membrane trafficking [BR:
lja04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
130718015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
130718015
NCBI-ProteinID:
XP_057424429
LinkDB
All DBs
Position
5:1092444..1102677
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AA seq
791 aa
AA seq
DB search
MIAEGFEDEEKWLAEGIAGVQHNAFFLHRALDDNNLRDALKYAAMMLSELRTSRLSPHKY
YELYMRAFDELRRLEIFFKDETRHGVAIVDLYELVQHAGNILPRLYLLCTAGSVYLRCKD
APVKDVLKDLVEMCRSVQHPIRGLFLRSYLSQISRDKLPDIGSEYEGGDSNGVMDAVEFV
LQNFTEMNKLWVRLQHQGPGRIRDKKEKERNELRDLVGKNLHVLSQIEGVDLEMYKDTVL
PSVLEQVVNCKDELAQFYLMECIIQVFPDEYHLQTLETLLGACPQLQPAVDIKTVLSQLM
DRLSNYAASSTEALPQFLQVEAFAKLSTAISRVIEAQVDMPIVGAIALHVSLLTFTLRVH
PDQLDYVDQVLGSCVKKLSGKPKLDDNRATKQVVALLSAPLDKYNDVVTALTLSNYPRVM
DHLDNETNKVMAMVIIQSIMKNNTCISNADKVEVLFELIKGLITDLDGTAVDEVDEEDFN
EEQNSVARLIHMLHNNDPEEMFKIICTVKKHIMNGGPKRLPFTVPSLIFSALRLIRQLQG
QDGDVVGEEVPLTPKKIFQLLNEIIEALSSVSSPELALRLYLQCAEAANDCELEPVAYEF
FTQAFVLYEEEIADSKAQVTAIHLIIGTLQRMNVFGVENRDTLTHKATGYSAKLLKKPDQ
CRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVTLFVEIL
NKYIYYFEKGNPQITSANIQGLIELITSEMQSDTASALPVSDAFFASTLRYIQFQKQKGG
ILGEKYDSIKV
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgattgcagagggcttcgaagacgaggagaaatggctcgccgaggggatcgccggcgtt
caacacaacgcattcttcctccatcgcgcactggatgacaataatctcagagacgccctc
aaatacgcagcgatgatgctatcggagcttcgaacttctcggctctcacctcacaaatat
tatgaactctatatgagagccttcgacgagctcaggaggctcgagatcttcttcaaagac
gaaaccagacacggtgttgccattgttgatctctatgagcttgttcagcacgctggaaat
atattgcctagactgtatcttctttgtacggcaggatccgtttacctcagatgtaaggat
gctcctgtaaaggacgttcttaaagatctagtagaaatgtgccgcagcgttcaacatcca
attcgtggtctattcttgaggagttacctgtctcaaatcagtagagacaagttgcctgat
atcggctctgaatatgaaggcggggattctaacggtgtgatggatgcggttgaatttgtt
ctacaaaatttcacagaaatgaataagctttgggttcgattgcagcatcagggacctggt
cggataagagacaagaaggaaaaagaaaggaatgagcttcgcgatcttgtagggaagaat
ctccatgttctcagtcaaatagagggagtggaccttgaaatgtataaagacaccgtcctt
ccaagtgtcttagagcaggttgtcaattgtaaagacgagcttgcccaattttatctcatg
gagtgcataatccaggtttttccagatgagtaccacttgcagacacttgagacactgtta
ggtgcttgcccccagttgcagcctgccgtagacatcaagacagtgttatctcagttaatg
gataggttgtcaaattatgctgcctcaagtactgaagcattgcctcaatttctgcaagtg
gaagcatttgccaaattaagcactgcaataagcagggtgatagaagcacaggttgacatg
cctattgttggagcaatagctttgcatgtctctctgcttacatttactcttcgtgttcac
ccagatcaactagattatgtggatcaagtattgggatcatgtgtcaagaagctttctgga
aaaccaaaactcgatgacaacagagcaactaagcaagttgttgcacttttaagtgctccc
cttgataaatacaatgatgttgtgactgccttgacactttccaattaccctcgtgtaatg
gatcatcttgataatgagacgaataaagtaatggcaatggtcattatccaaagcattatg
aagaataacacttgcatctctaatgctgataaggtggaagttttatttgaactaataaaa
gggcttataacggatttggatggaacagctgtggatgaggttgatgaggaagatttcaac
gaagaacaaaattctgttgctcgcctcatacacatgcttcataataatgacccagaggaa
atgtttaagattatatgtactgtaaagaagcatattatgaatggaggaccaaagcgccta
ccctttacagttccttccctaatattttctgcacttaggttaatcaggcaattgcaaggg
caggatggagacgtagtgggagaagaagttcctttaacacccaaaaaaatatttcagctt
ttaaatgagatcattgaagccctttcttctgtatcatctcctgaactggccctgagactg
tatctgcaatgtgcggaggctgctaatgactgtgaactcgagcctgttgcctatgaattt
ttcacacaggcatttgtattatatgaagaagaaattgcggattctaaagctcaggtaact
gcaatacacttaattatcgggactctccagagaatgaacgtctttggtgttgagaacagg
gatacgttaacacacaaggccacagggtattcagcaaagcttttgaagaaacctgatcag
tgccgtgcggtttatgcatgctcacatctcttttgggttgatgatcaagatggtattaaa
gacggagaaagagtattgctttgccttaagcgtgctttgaggattgcaaatgctgctcag
caaatggccaatgttgctaggggtagcagtggtccagtgacgctttttgttgaaatactg
aacaagtacatttactattttgagaaaggaaacccacagatcaccagtgctaatatccag
gggcttatagaattaatcacgagcgaaatgcagagtgacactgcatcagctcttccagtt
tcagatgcattctttgccagcacattgaggtacatccaattccaaaaacagaagggcggt
atactgggtgagaaatatgattctatcaaggtataa
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