Lotus japonicus: 130718082
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Entry
130718082 CDS
T04348
Name
(RefSeq) serine/arginine-rich splicing factor SR30-like isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130718082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
130718082
Spliceosome [BR:
lja03041
]
Common components
Common spliceosomal components
SR proteins
130718082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_occluded
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
130718082
NCBI-ProteinID:
XP_057424523
LinkDB
All DBs
Position
5:complement(53153792..53160521)
Genome browser
AA seq
272 aa
AA seq
DB search
MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED
AIYYRDGYDFDGFRLRVELAHGGRGSSSSVDRYSSYSGGSSSRGASRRSDYRVLVTGLPP
SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMRYALRKLDDSEFRNAFSRA
YIRVREYDRDYSRSPSRDSRRSYSRSISRSPYLSRSRSRSRSYSGRSISLSPNAKHSRRS
LSLSRSQSRSRSPNSSPRLRQSRSPSKSPRSP
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccggtcaagccgaacaatttatgttggcaacctccctggcgatattcgcttg
agagaagtagaggatattttctacaagtttggtcctattgttgacattgatttgaagatt
cctccaagaccaccaggttatgcttttgttcagtttgaggatgctcgtgatgctgaagat
gcaatctactatcgagatggttacgattttgatggttttcggttacgagttgaacttgca
catgggggacggggttcttcatcatcagtagaccgttacagtagttatagtggtggcagc
agtagccgtggagcttccaggcgttctgactatcgtgttctggtgactggattacctcct
tccgcctcatggcaagacctgaaagatcacatgcgtaaagctggtgatgtgtgtttctct
caagttttccgtgagcgtggaggcatgactgggatagtagactacaccaattatgatgat
atgagatatgccttaaggaaacttgatgactcagaatttcgaaatgccttctctcgagcg
tacatacgggtgagggaatatgatcgggattattctagaagccccagtcgtgactctagg
agaagctattctcgaagcatcagccgcagtccatatttatcacgaagtcgaagccgaagt
cgtagctatagtggcaggagtataagtttgtctccaaatgcaaaacactctcgacgttcg
ttatctctttcaaggtcccagtcaagatccagatctccaaattcatctcctcgacttcgt
cagagtcgcagtccaagcaaaagtccaaggagtccgtaa
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