Lotus japonicus: 130718571
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Entry
130718571 CDS
T04348
Name
(RefSeq) pre-mRNA-splicing factor 38
KO
K12849
pre-mRNA-splicing factor 38A
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130718571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
130718571
Spliceosome [BR:
lja03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
130718571
Complex C
U4/U6.U5 tri-SnRNP related factors
130718571
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
Motif
Other DBs
NCBI-GeneID:
130718571
NCBI-ProteinID:
XP_057425163
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All DBs
Position
5:53477743..53481255
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AA seq
387 aa
AA seq
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MANRTDPAAKSIRGTNPQNLVEKILRSKIYQHTYWKEQCFGLTAETLVDKAMELDHLGGT
YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRILGAFYLRLTGSDIDVYRYL
EPLYNDYRKLRRKSPDGQFSLTHVDEVIDELLTKDYSCDIAMPRIKRRWTIEALGTLEPR
RSALEEDFEEEEEKEDNDQPVDEVEDRAYEKDYYRGRSPARERDRDRRRDSHRHRDRDYD
KDYDRDYDRGRGRDRDRDRDREKERDRDRDRDRDRYRLREEKDYGRDREGRERERRDRDR
DRGRRRSRSRSRSRSRDRKEHDGGDYRKRHARSSVSPRRQGDEDGEPKKKKEKREKKEKK
DDGTDHPDPEIAEANRLRASLGLKPLK
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcgaaccgatccagcggcgaagagcataagaggaacaaaccctcaaaaccta
gtcgagaagattctccgttccaagatctaccagcacacctattggaaggaacaatgcttc
ggcttaaccgccgagaccttggttgacaaggccatggagcttgaccatctcggcggcacc
tacggcggcaaccggaaacccactcccttcatgtgcctcgtcatgaagatgctccagatt
caacctgagaaggaaatcgttatcgagttcatcaaaaacgaggattacaagtatgtgagg
attcttggtgctttttatctgcgtcttactggttctgatattgatgtgtaccgttacctg
gaacccttgtataatgattatcggaaactgcggcgaaaatcaccggatggacagttttcg
ttgacgcacgtggatgaggtcattgatgagcttctcacgaaagattattcgtgtgatatt
gctatgccgcgtatcaagagaaggtggactattgaagctcttggtactttagaacctagg
agaagtgcacttgaagaagatttcgaggaggaagaggagaaagaggataatgaccagcct
gttgatgaggttgaagatagggcgtatgagaaggattattatcgtgggcgaagccctgca
agggaaagagatagggatagaagacgtgatagtcatagacacagggatcgtgactatgac
aaagattatgatagagattatgacagaggacgtggccgagatagagatagagacagggac
agggaaaaggagagggacagagacagggacagggatagagaccgatatcgtctgagggaa
gaaaaagattatggtcgtgatagagagggcagggagcgggaaaggagagacagggatcgt
gaccgtggaaggcgaaggagccgctcaaggagtcgaagtaggagtagggatcgcaaggaa
catgatggtggagactacagaaagagacatgctcgaagtagtgtaagccctagaagacag
ggagacgaggatggagagccaaagaagaagaaggagaagagagaaaagaaggaaaagaag
gatgatgggactgaccacccagatcctgagattgctgaagcaaacaggctacgagcatcc
ctgggtttgaaaccactgaaatga
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