Lotus japonicus: 130720270
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Entry
130720270 CDS
T04348
Name
(RefSeq) protein CHROMATIN REMODELING 8 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
lja
Lotus japonicus
Pathway
lja03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
130720270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lja03036
]
130720270
03400 DNA repair and recombination proteins [BR:
lja03400
]
130720270
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
130720270
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
130720270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
ResIII
HDA2-3
WHD_SOWAH
TFIIF_beta
Motif
Other DBs
NCBI-GeneID:
130720270
NCBI-ProteinID:
XP_057426878
LinkDB
All DBs
Position
5:40598381..40605030
Genome browser
AA seq
1237 aa
AA seq
DB search
MEEEQDRILLSSLGVKSANPEDIERHVLEKARNDAAVTVTTEGEGSNTKEEESSHSREPL
DPSSTAKAELHQKLRAVEFEIGAVSSTIRKPKKDGGGEGSSERGVAEGDAPGGGGGDGSS
LQRALAADRLRSLKNTRAKLTNELSSLCEKNTKAQLEEELANLRKTLLRSLVKEDTRPKK
KLKEDKKLTKKSGKRVKTVSFNDDADFDAVLDAASAGFVETERDEMVRKGILTPFHKLKG
FERRFSQPEASASHNAETSASHAAAQQENNGDLVSSSVERAARSFSEAAKARPTTKLLES
RDLPKLDAPTIPFRRLTKPLKYSKPIDREAEPNKDSKRKRKRPLPGRQWTNRVSREDMQL
EDSENANGCLDTSDQENLGAQDDLADHESSYVTLEGGLKIPDNIFEALFDYQKVGVQWLW
ELHCQKAGGIIGDEMGLGKTVQVLSFLGALHFSGMFKPSIIVCPVTLLRQWKREANKWYP
KFHVELLHDSAQDSAPKKKQDKSDESDYENSSSDDNDNERSMSSGNSRKWESLINRVTRS
ESGLLITTYEQLRILGDQLLDIEWGYAVLDEGHKIRNPNAEVTLVCKQLQTVHRIIMTGA
PIQNKLTELWSLFDFVFPGKLGVLPVFEAEFAVPIGVGGYANATPLQVSTAYRCAVVLRD
LIMPYLLRRMKADVNAQLPNKTEHVLFCSLTPEQVSSYRAFLASTEVEEILDGNRNSLSG
IDVMRKICNHPDLLERDHALSNPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFCQTQQM
LDIFENFLTTSGHVYRRMDGHTPVKYRMALIDEFNASNEIFVFILTTKVGGLGTNLTGAN
RVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL
KNPQQKRFFKARDMKDLFILNVDGDTGSTETSNIFSQISEEVNVIGSHIDNQDKHQYNQT
AEAGSGDDDVDNDGESPRGSLRGKGKEKVEGGSGIDEETNILKSLFDANGIHSAMNHDVI
MNAHDGEKMRLDEQASQVAQRAAEALRQSRILRSNDSVSVPTWTGRSGAAGAPSSVRRKF
GSTVNPQLVNNSKAPDALPSNGTNKFNGFAAGASSGKALSSAELLSKIRGNQEKAIGAGL
EHQLGTSSTTNQARSTDVRSSRAAENSSGSQPEVLIRQICTFLQQQGGSSSSASIVQHFK
DRVSSRELALFKNMLKEIAILQKGSNGSHWVLKPEYQ
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagagcaggatcgaattttgctctccagtttgggcgtgaagtctgccaatccc
gaagacatcgaacgccatgttttggaaaaggctaggaatgatgctgcagtgactgttact
actgaaggtgaagggagcaacaccaaggaagaagagtcttctcattcacgggaacctctt
gatccatcttcgactgctaaagcggagcttcatcagaagctgcgggcggtggagtttgaa
ataggcgcggtttcttccactattcggaagccgaaaaaagatggtggtggtgagggtagc
tcggagcgaggggttgctgagggtgatgcccctggtggtggtggtggtgatggttcgagt
cttcagcgtgctcttgctgcagataggctcaggagcttgaagaatactagggctaaattg
acgaatgagctttccagtttgtgtgaaaagaacacgaaggctcagctagaggaagagctt
gccaatttgcggaagactctgcttcggagtttagttaaggaagacacgaggccgaagaag
aagcttaaagaagataaaaagttgactaaaaaatcggggaaacgagttaagacggtctcg
tttaatgatgatgctgatttcgacgctgttttggatgcagcttctgctggctttgttgaa
accgaaagggatgaaatggtcagaaaaggaattttaactccttttcataagctgaaggga
tttgagcggcgctttagtcaacctgaagcatcagctagtcataatgctgaaacatccgct
agccatgctgcagcacagcaagaaaacaatggtgatcttgtctcttccagtgttgaaaga
gctgctagatcattttctgaggcagcgaaagctcgccccaccaccaagctgcttgagtct
agagatttaccgaagcttgatgcacccactattccctttcgcaggctcacaaaacctctt
aaatattccaaacctatagatagagaggccgagccaaataaagattcaaaaaggaaaagg
aagcgacctttgcctggtaggcaatggaccaatcgtgtttctcgtgaggatatgcagctg
gaagatagtgaaaatgcaaatggttgtttggatacttccgatcaggaaaatttaggagca
caagatgaccttgctgatcatgaatcttcttatgtcacattagaaggtgggctgaaaatc
cctgataacatatttgaagctctgtttgattatcaaaaggttggtgttcaatggctgtgg
gaattacattgtcaaaaagctggtggaattattggtgatgagatgggtcttggtaaaact
gtccaggtgttatcatttctgggtgcattgcatttcagtggtatgttcaagcccagcatt
attgtctgtcctgttacactcttgcgacagtggaaaagggaagctaataagtggtacccg
aaattccatgtagagcttttacatgattctgctcaggattctgcccctaaaaagaagcaa
gacaaatccgatgaatcagactatgaaaacagtagttcagatgacaatgataatgagaga
agtatgtcatctggaaactcaagaaaatgggaatccctgataaatcgtgtcacaagatct
gaatcgggattacttatcaccacttatgagcagctcagaatattgggggaccaattgctt
gacattgaatggggctacgcagttcttgatgaagggcataaaataaggaatccgaatgct
gaagtcaccctcgtatgcaaacagcttcaaactgtacaccgcatcataatgactggtgca
cctattcagaacaaactgactgaactctggtcattgtttgattttgtttttcctggaaaa
ttgggtgttttacctgtatttgaagctgaatttgcagttccaataggagttggtggatat
gcaaatgccacacccttacaagtatcaacagcatacaggtgtgccgtggtgcttcgtgat
ttaatcatgccatatcttctccgacgcatgaaggctgatgtaaatgctcaacttcctaat
aaaactgagcatgttttattttgcagtcttacaccagagcaagtatcttcttacagggca
tttttagcaagcactgaagtggaggaaatattggatggaaaccggaattctctgtctggg
attgatgtaatgcgcaagatctgcaaccatcctgacctacttgaaagggaccatgcctta
agtaatccagattatggaaatccagaacgtagtgggaaaatgaaagttgtagctcaggtg
cttaatgtttggaaggaacaaggtcaccgtgttcttcttttctgtcaaacccaacaaatg
cttgacatttttgagaattttttgactacttctggtcatgtttaccggagaatggatggt
cacactcccgtcaaatatagaatggctttaatagatgaatttaatgcctcaaacgagata
tttgttttcattttgacaaccaaagttgggggtttagggacaaatcttacaggtgcaaat
agggtgatcatcttcgaccctgattggaatccttcaactgatatgcaagctagagagcgt
gcttggcgcattggtcagaaacgggatgtgacagtgtataggttgatcacacgtggaacg
atagaggagaaagtgtatcaccggcagatttacaaacattttcttaccaataagatattg
aagaacccacagcagaaaaggttctttaaagcccgggatatgaaagaccttttcatactg
aatgtggatggagatactgggtctactgaaacatcgaacattttcagtcaaatatctgaa
gaagtaaatgtcattggttcacacatagataatcaggataagcatcaatataaccaaact
gctgaagcgggttctggagatgatgacgttgataatgatggtgaatcaccgagaggatct
ttaagaggaaaagggaaagagaaggttgaaggcggcagtggaattgatgaggaaacaaat
atattgaaaagtctttttgacgccaatggcatacatagtgccatgaaccatgatgtgatc
atgaatgctcatgatggggagaagatgagacttgatgagcaagcttcccaggttgcgcaa
cgagctgcagaagctttacgtcagtcacggatactccgaagcaatgacagcgtctccgtt
ccaacatggacaggaaggtcgggagctgctggtgcaccatcatcagttcggcggaagttt
ggttcaaccgtgaatccccagttagtaaataattcaaaggcaccggatgcattaccaagc
aacggtaccaacaaattcaatggatttgctgctggggcatcttctggtaaagcattatct
tctgctgaactgttgtctaaaattcgaggtaaccaagaaaaagcaatcggtgctgggctt
gaacatcagcttggtacgtccagtaccactaatcaagcaagatctacagatgttagatct
tctagggctgctgaaaattcatctggatcgcaacctgaagtattgattcgtcaaatatgt
acttttctacaacagcaaggtggtagttccagttcagccagcatagtacagcatttcaag
gaccgtgtttcctcaagagaacttgccctattcaagaatatgttaaaggaaatagcaatt
ttgcagaaaggatcaaatggttcccattgggttctgaagccagagtatcaataa
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