Lotus japonicus: 130720698
Help
Entry
130720698 CDS
T04348
Name
(RefSeq) putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
KO
K20827
RNA polymerase II-associated protein 2 [EC:
3.1.3.16
]
Organism
lja
Lotus japonicus
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lja01009
]
130720698
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
130720698
Enzymes [BR:
lja01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
130720698
Protein phosphatases and associated proteins [BR:
lja01009
]
HAD phosphatases
Fcp/Scp phosphatases
130720698
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
130720698
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP2_Rtr1
Motif
Other DBs
NCBI-GeneID:
130720698
NCBI-ProteinID:
XP_057427363
LinkDB
All DBs
Position
5:complement(20497938..20503825)
Genome browser
AA seq
706 aa
AA seq
DB search
MAKNQHVFVKDAVFKLQMSLLEGIRSEDQLFAAGSLISRSDYEDVVTERSITNVCGYPLC
RNGLPSDRPRKGRYRISLKEHKVYDQHETYMFCSSTCVVNSKAFAGTLQGERCPTVDPEK
LNDVLRLFENLNAEPVEDLGKGGDLGLSGLRIQEKTESSTGEVSLEQWLGPSNAIEGYVP
KQRKSDSKSSQKNIKKGSKASRGRLNDDKKLIYSEMDFMSTIITQDEYSVSKVSSGQTDT
TADHQIKPVAKVEVPKKADKVASKDDDSVQDLSSSFKSSLNLSTSEKEKEIDKSDEPVIK
SSLNPSVEKIAVHSSTMSEILDVEQNISERKSIQLQGETSRVAANQNAFTSSLDPVNVEG
EFQIEKETGSYKTRPKSSLKSTGKNKLSRSVTWADEKTNSSGSKDLCSVREFGDGDIKKE
SDLEGNIDVTDDDEDIVRRASAEACAIALSQASEAVASGDSDITDAVSEAGIIILPSSHD
VVEEGTMEDVDIPETDAVTLKWPRKPGISDFDLFDSEDSWYDPPPEGFSLTLSPFASMWN
ALFSWTTSSSLAYIYGRDVSFHEDFLSVNGREYPCKIILTDGRSSEIKQALASCLARALP
AVVAELRLPIPVSTLEQGVVCLLDTMSFVDALPAFRMKQWQVVVLLFIDALSVCRIPALI
SYMMDRRDLFHKVLNGSQLGMEEYEVLKDLIIPLGKAPHFSSQRGA
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaccaacatgtttttgtcaaagatgctgttttcaaattgcaaatgtccctc
cttgaaggcatccgaagcgaagaccagctgtttgcagctgggtctttgatatcgaggagt
gactatgaagatgttgtgactgagaggtccattacaaatgtatgcggttatccactctgc
cgcaatggtttaccctctgatcgcccccggaagggtagatatcggatttcgctgaaggag
cacaaagtttatgatcagcacgagacgtacatgttttgttcttccacttgtgttgttaac
agcaaagcttttgctgggaccttgcaaggtgagaggtgcccgactgtggacccagagaaa
ctcaacgatgttctcaggttgtttgagaatttgaatgcagaacctgtggaggatttgggg
aagggtggagatttaggtttgtctggcttgagaatccaggagaaaactgagtccagcaca
ggggaggtgtccttggagcagtggcttggaccttcaaatgcaattgagggttatgtacca
aagcaaagaaagagtgattctaagagttctcagaaaaatattaaaaaagggtccaaagct
agtcgtggcaggttgaatgatgacaaaaaattaatttacagtgagatggacttcatgagt
actataattacgcaagatgagtatagtgtttctaaagtatcatcaggtcaaacagacaca
actgctgatcatcaaattaagccagtggccaaagtggaggtgccaaaaaaggctgataaa
gtggctagtaaagatgatgatagtgtacaagatctgtcttcatctttcaagagtagtcta
aatttaagtacctcagaaaaagagaaggaaatagataaatcagatgaacctgttatcaaa
tcctctctgaatccttctgttgaaaagatagctgttcattcttccaccatgtcagaaata
cttgatgtagaacagaatatttctgaaaggaaatcaatacaactccaaggggaaacaagt
agagttgctgctaatcagaatgccttcacctccagtttagatcctgtcaatgttgaaggg
gaatttcaaatagaaaaagaaactggatcatacaagactagacccaaatcttctcttaag
tccactggtaaaaataaacttagtcgctctgttacttgggctgatgagaaaaccaacagc
tctgggagtaaagatctttgttcagttagagaatttggggatggagatattaaaaaagaa
tctgatttagagggtaatatagatgttactgatgatgatgaagatatagtacgtcgtgca
tcagcagaagcatgtgcaattgcattgagccaagcatcagaagcagttgcatctggagac
tcagatatcactgatgctgtttctgaagctggaatcattatattgccatcttcccatgat
gttgttgaggaaggtactatggaggatgttgatattccagaaacagatgcagttactctg
aaatggcctagaaagcctggaatttctgattttgacttgtttgactctgaagactcatgg
tatgaccctccaccagagggtttcagtttgactttgtcaccttttgcatctatgtggaat
gccctcttttcgtggacaacatcatcttctttggcatatatatatgggagggatgtaagt
tttcatgaagactttctatcagttaacgggagagaatatccttgcaaaattatcttgaca
gatggtcggtcatctgaaataaagcaagctttagccagttgtcttgctcgagctttacct
gcagttgtcgctgagctcaggctgccaattccagtatctaccttagagcaaggggtggta
tgcttgctggatacaatgtcatttgtggatgcacttccagcattcagaatgaaacaatgg
caagttgttgttcttttgttcattgatgcattgtccgtttgtagaatacctgctcttatc
tcatacatgatggatcggagggacttgtttcacaaggttctgaatggttcccaattaggt
atggaagagtatgaggttttgaaggatctcattattccacttggcaaagcacctcatttc
tcttctcaaaggggagcgtga
DBGET
integrated database retrieval system
