Lotus japonicus: 130720727
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Entry
130720727 CDS
T04348
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
lja
Lotus japonicus
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lja03009
]
130720727
Ribosome biogenesis [BR:
lja03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
130720727
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
WDR55
NBCH_WD40
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
Beta-prop_HPS5
WDR90_beta-prop_4th
WD40_MABP1-WDR62_2nd
Beta-prop_IP5PC_F
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_VPS8
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
WDR54
Beta-prop_WDR75_2nd
Beta-prop_SPT8
Beta-prop_LRRK2
Beta-prop_Nup120_160
Beta-prop_DCAF12
PEP5_VPS11_N
WD40_RFWD3
DUF4987
PROPPIN
LZ3wCH
ELYS-bb
Motif
Other DBs
NCBI-GeneID:
130720727
NCBI-ProteinID:
XP_057427398
LinkDB
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Position
5:17164001..17169313
Genome browser
AA seq
448 aa
AA seq
DB search
MEVVLASSSVDGGIGCWNLQTGAEQLRYKSCSSPSHGLVSVGGRFIASSQIRDPSSSSSS
VLKLYFWSWSKPQVEVKSFPAEPIKPLAANHPGTYLAGGGSSGDVYFWQVETGRLLKKWH
AHYRAVTCLVFSEDDSLLISGSEDGSVRVWSLIKIFDDLGSLEAKNLYLHSFTEHTLCVT
DVVIGYGGCNAIILSASEDRTCKVWSLATGTLLRNIVFPSIIDAIVLDPAEHIFYAGSRD
GKIFIAALNTERIPTNNYGMHIIGSFSNHSKAVTCLAYGAAGNLLISGSEDGMVRVWNAR
TRNIIRTFKHAKGPVNNILVVKQEIDPSNHMSSTVQASSRKKGAYLSPPLEKYTNSTDED
SYIKVSLRGGATDVKYLSSEMISKYAKELQHQGSAAASEMEVEKLKHDCQRSMQMANHWK
KMYEDLQQFCVKELLDGGQARTLDENGK
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggaggttgttttggcatcttcctctgttgatggtgggataggctgttggaaccttcag
acaggcgctgaacagctccgttacaagtcctgttcctccccttctcatggtcttgtctct
gttggtggtcgcttcattgcatcttctcagattagagacccttcgtcttcctccagttct
gttttgaaattatatttctggtcctggtccaagcctcaagttgaagttaagagctttcct
gctgaacccattaagccccttgctgcgaatcacccgggcacctatctagctggtgggggt
tcgtcaggtgatgtatacttttggcaggttgaaactggcagattgcttaaaaagtggcat
gctcactatagggctgtgacatgcctggtattttctgaagatgactccctgctgatatct
ggttctgaagatggatctgttagagtttggtctctcatcaagatatttgatgatttggga
agcttggaagccaaaaatctttatctacacagttttacagagcacactctgtgtgtgact
gatgttgtgattggttatggagggtgcaatgcaattatactgtcagcttcagaggaccgg
acctgtaaggtgtggagcttagctacgggaactctactaagaaacatagtattcccttca
ataattgatgccattgtcttggatcctgctgaacatatcttttatgctggcagtagagat
ggaaaaatatttattgctgcacttaacactgaaagaatccctactaataattatgggatg
catatcattggttcattttctaaccacagcaaggcagttacttgcttagcatatggcgcc
gctgggaatttattaatatctgggtcagaggatggaatggttcgtgtttggaatgcaaga
actcgtaacatcatccgcacgtttaaacatgctaaagggccagtaaataatattcttgtt
gttaaacaagaaattgacccaagtaatcatatgtcttctactgtacaagcatcctcaaga
aagaaaggggcttatttatcccctccattagaaaaatatacaaattctacagatgaagac
tcatatataaaggtcagcctcaggggtggcgcgacagatgttaaatatctcagttctgaa
atgatatctaagtatgctaaggaacttcagcatcaaggttcagctgctgcttctgaaatg
gaggtggagaagctaaaacatgattgccaaaggtcaatgcaaatggcaaatcattggaag
aaaatgtatgaagatttgcaacagttttgtgtgaaggagctgttagatggtggtcaagca
agaaccttggatgaaaatggcaaataa
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