Lotus japonicus: 130720882
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Entry
130720882 CDS
T04348
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
lja
Lotus japonicus
Pathway
lja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130720882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130720882
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
130720882
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
130720882
NCBI-ProteinID:
XP_057427570
LinkDB
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Position
5:complement(61877205..61881223)
Genome browser
AA seq
200 aa
AA seq
DB search
MVSSQVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEGILLVQEHN
HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWW
RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
PVISTIPQQLSRFQFKMITN
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcatctcaggtggtaaacacataccctctttccagctacaccttcggtaccaag
gagcccaagatggagaaagacacctccgtcgccgatcgtctcgctcgcatgaaagtcaac
tatatgaaggaaggaatgaggaccagcgttgaaggaattttactggtccaagaacataat
catcctcatatacttctcctgcaaattggaaacacattttgcaaactccctggtggtcgt
ctcaagccaggagagaatgaaattgagggcttgaagagaaagttgaccagcaagcttggt
gctaattcaccggctcttgtgcctgactggcagattggtgaatgtgttgcaatctggtgg
aggccaaattttgaaaccataatgtacccatactgccctcctcatataacaaaacccaag
gagtgcaagaagctcttccttgttcacttgtctgagagggaatactttgccgtgcccaaa
aacttgaaactgcttgctgttccattgtttgaactctatgacaatgttcagagatacggg
ccagttatatccaccattcctcagcagctttccagattccagtttaaaatgatcactaat
tga
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