KEGG   Lotus japonicus: 130720952
Entry
130720952         CDS       T04348                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
lja  Lotus japonicus
Pathway
lja03018  RNA degradation
lja03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130720952
  09123 Folding, sorting and degradation
   03018 RNA degradation
    130720952
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lja03019]
    130720952
   03041 Spliceosome [BR:lja03041]
    130720952
Messenger RNA biogenesis [BR:lja03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     130720952
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     130720952
Spliceosome [BR:lja03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    130720952
SSDB
Motif
Pfam: LSM DUF150_C DUF3294
Other DBs
NCBI-GeneID: 130720952
NCBI-ProteinID: XP_057427642
LinkDB
Position
5:54272924..54277057
AA seq 98 aa
MSTGPGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALG
LYIIRGDNISVVGELDEDLDKNLDKSKIRAQPLKPVIH
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtcgaccgggcctggacttgagtctcttgtagatcagcaaatttcagtgattacaaat
gatggacgaaatatagtgggtaccctaaaaggttttgaccaggcaacgaatataattctt
gatgagtcccatgaacgagttttttctaccaaggaaggtgtacagctaattgctctcggt
ctatacatcattaggggtgacaacataagtgttgtcggtgaactggatgaggatctagat
aaaaaccttgataagtccaagattagagctcagcctttgaagcctgtcatccactga

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