Lotus japonicus: 130720952
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Entry
130720952 CDS
T04348
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130720952
09123 Folding, sorting and degradation
03018 RNA degradation
130720952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130720952
03041 Spliceosome [BR:
lja03041
]
130720952
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130720952
mRNA degradation factors
5'-3' decay
Lsm complex
130720952
Spliceosome [BR:
lja03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
130720952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
DUF3294
Motif
Other DBs
NCBI-GeneID:
130720952
NCBI-ProteinID:
XP_057427642
LinkDB
All DBs
Position
5:54272924..54277057
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AA seq
98 aa
AA seq
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MSTGPGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALG
LYIIRGDNISVVGELDEDLDKNLDKSKIRAQPLKPVIH
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccgggcctggacttgagtctcttgtagatcagcaaatttcagtgattacaaat
gatggacgaaatatagtgggtaccctaaaaggttttgaccaggcaacgaatataattctt
gatgagtcccatgaacgagttttttctaccaaggaaggtgtacagctaattgctctcggt
ctatacatcattaggggtgacaacataagtgttgtcggtgaactggatgaggatctagat
aaaaaccttgataagtccaagattagagctcagcctttgaagcctgtcatccactga
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