Lotus japonicus: 130721577
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Entry
130721577 CDS
T04348
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
lja
Lotus japonicus
Pathway
lja03022
Basal transcription factors
lja03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130721577
09124 Replication and repair
03420 Nucleotide excision repair
130721577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
130721577
03400 DNA repair and recombination proteins [BR:
lja03400
]
130721577
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
130721577
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
130721577
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
130721577
NCBI-ProteinID:
XP_057428360
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Position
5:56668661..56679745
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AA seq
583 aa
AA seq
DB search
MSSGQVVKRAKYKTTVKGPGTPGILKLTQDKFVFKPNDPTSNNKLDVEFRFIKGHRVTKE
GSKQPLLNLTHAQGSYIFELESFPDLHVCRELVGNALSKHVEAPKVTTEEQLSTAELTLR
LKLLQEDSKLQKLFKELVAGGKLTESEFWATKKKMLDQDESRKSKQRIGFKNSLIFDTKP
TSDGRINQVKFQLTPEIKYQIFALKPAVHQAFFNFVPKKMTEVDFWNKYFKAEYLHSTKN
IIAAAAEAAEDEDLAVFLKDDEILEIEARKKVRRVDPTLDMEADQGDDYTHLPDHGIFRD
GSKEIPEAQHPLYRRTLLQDLNRQGAVVLEGKTLDMETEQPRTVAEVIARRQQESDGVRE
EERRNRISKMTQIEDLQAQDDHPFAPLCIKDPRDYFDSQQANAVKTLDDSLAGMEQTRCS
LGSEEAYGSLRASISKIKAKGLKDPLLSPEVALKVLNGLTKNISSTKSHLGKNSQESVLD
LLPSTTKEKLLDHWVCSQELLRHFWSSYPITAQNLISKTARLKEAISQIYSKLEEIKVSA
QSDLRHQVSLIVHPMQQALDAALLHYDADIKKRNARGQKPNGV
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctgggcaagtggttaagcgtgccaaatacaaaaccaccgtgaaaggtcctggc
actcctggtattctcaaattgactcaagataagtttgttttcaagcctaatgatcctacc
tcaaacaacaagctcgacgtcgagttcagatttataaaaggtcatagagttacgaaagag
ggatcgaaacaaccgttgcttaaccttacccatgcccagggaagttacatctttgagtta
gaaagctttccagatcttcatgtttgtcgggagttggtgggtaatgcccttagcaagcat
gtagaagctccaaaagttactactgaggaacagcttagcactgctgaactgacactcagg
ttgaaactattgcaagaagatagtaagttgcagaaactttttaaggaactcgtggctggt
ggtaagcttaccgaatcagaattttgggctacaaagaagaaaatgctggatcaagatgaa
agcagaaagtcaaaacaacggattggttttaaaaattctttgatctttgacacaaagcct
actagtgatggtcggataaatcaggttaaatttcagttgacaccagagataaaatatcag
atttttgcccttaaaccagctgttcaccaggcttttttcaattttgttcctaagaagatg
actgaggttgatttttggaacaaatacttcaaagctgaatatctccatagtaccaaaaat
attattgctgcagctgctgaggctgctgaagatgaggatcttgctgtttttttgaaagat
gatgagatattagaaattgaagcccgaaagaaggttcgacgggttgatccaactttagac
atggaagcagaccaaggagatgattacactcatcttcctgatcacgggatcttccgcgat
ggcagcaaggaaatacctgaagctcaacatcccttgtataggagaacattgttacaagat
cttaacagacaaggtgcagtagttctcgaaggaaaaactttagatatggaaacggaacaa
ccaagaacagtggcagaagttattgcacggagacaacaggaatctgatggagttagagag
gaggagagacgaaacagaatttctaagatgacccagattgaggatctgcaggcacaagat
gatcatccttttgcaccactctgtattaaggatcctcgtgactactttgattcccagcaa
gctaatgcagtaaaaactttggatgattccctagctggaatggaacaaacaagatgtagt
ttgggttctgaggaagcctatggctctttgagggcatccatatctaagatcaaagctaaa
ggattaaaggatcctctacttagtcctgaggttgctcttaaggtccttaatggattgaca
aaaaatatttcaagcaccaaatctcatcttggaaaaaattctcaggagagtgtccttgat
ttattgcccagcacaacgaaggagaagctactagatcattgggtgtgcagtcaggaattg
ctgaggcacttttggtcttcctatccaataacagcacaaaaccttattagtaagacagcg
agactgaaagaggctatatcacaaatttactctaaacttgaggaaataaaggtatctgca
cagtcagacctgcggcatcaggtttcgcttattgtccatcctatgcagcaggctttggat
gctgccttgttacattatgatgctgacattaagaaaagaaatgcaagaggacagaagcct
aatggtgtttag
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