Lotus japonicus: 130721923
Help
Entry
130721923 CDS
T04348
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130721923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130721923
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130721923
mRNA degradation factors
5'-3' decay
Decapping complex
130721923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
130721923
NCBI-ProteinID:
XP_057428493
LinkDB
All DBs
Position
6:complement(40228341..40236936)
Genome browser
AA seq
1375 aa
AA seq
DB search
MAAPNQQPPPPPPTFDMHSFFNPPNPNPNNHLASSPFPSSAPPPPSSSASYPPPAGPFSA
APYFPFDHHQHFPLHPHHYLQQQQQQHQQLQQHRSLSFPTPPLQPQPIPPPSNPNAGASL
MALLSANPPMQPQQQQQPFSDFAASSPHAPPSVGALTAANAAAAALIRLPSSKLPKGRHL
TGEHVVYDVDVRLPGEVQPQLEVAPITKYGSDPNPVLGRQIAVNKSYICYGLKQGNIRVL
NIHTAGRSLLRGHTQRVTDLAFFAEDVHLLASVCIDGRVYVWKISEGPDDEDKPQITANI
VIAIQIVAEEKVEHPQICWHCHKQEILIVGMGKHVLRIDTTKVGNGEAFLAEDPPKCPLD
KLIEGVQLVGTHDGEVTDLSMCQWMTNRLVSASQDGTIKIWEDRKMQPLAILRPHDGHPV
FSATFFTAPHRPDHIVLVTAGPRNREVKLWVAASEEGWLLPSDAESWKCTQTLELKSSAQ
PSLKDAFFNQVAALPHAGLLLLANAQRNAIYAVHLEYGPNPESTRMDYIAEFTVTMPILS
FTGTSDVLPHGEHIVQVYCVQTQAIQQYALDLVQCLPPLLENVGLEKSDSSVSRDAMTAE
GFTSLDSSEMSLANSAPKTMIQASGTESGLVARYPLSSGHIDSTMSKDISSSNIDAKSVT
LASSSSDADIVCVPSPPLPLSPRLSRKLSDFRSPQSNLGDHVVDRPVNDYSVDRQMDTIH
RNLSDPLNNDEKKINQDDISSVPNPSAMFMQPTHLVTPSEFVKAGSSSEANIIDKKNEGE
TMIQDIVDVGNAEVEVKVVGETRSNQSDDIGQQGSQQNPLYDNKEKLFCSQASDLGIEMA
RECCAISGETCITEEPGQIDSIVGDSLAQPSNGGHGIQDMTKDVHEKVSDSSTSMVVPPS
PAPNTKGKRQKGKNSQVSGPSSPSPSACNSTDSSNEPNGSSSLQSTENASQILAMQETLN
QLLTMQKEMQKQMTMMVSVPVTKEGRRLEASLGKSMEKAVKIHSDILWTRFQEENAKNEK
VSRDRLQHITGLISNFMNKDLPAILEKTVKKEIASVGPAVVRAMSPAVEKIISSTIMESF
QRGVGDKAVNQLDKSVNSKLEATVARQIQAQFQTTGKQVLQDALRSSFETSAVPAFEMSC
KAMFEQVDATFQKGMLEHSTAVQQRLESGPTSLAMALRDSINSASSVTQTLSREVLEGQR
KLMTLAIARTNSGTLNPHPVQLNSGPLLHEKVEVPLDPTKELARLISERKYDEAFTVSLQ
RSDVSIVSWLCSQVDLHGLLSMVPLPLSQGVVLSLLQQLACDINNDTPRKLAWMTDIAAA
INSSDPMITLHVRGIFEQVYQILNHQRSLPTMTGPDLSSIRLLMHVVNSVLVTCK
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcccaatcaacaaccaccaccaccaccacccaccttcgacatgcactccttc
ttcaaccctccaaaccctaaccctaacaaccaccttgcttcttccccattcccttcctcc
gccccacctcctccgtcctcctccgcctcctaccctcctcccgccggccccttctccgcc
gcgccgtacttccccttcgaccaccaccagcacttcccgctacacccccatcactacctc
cagcaacagcaacagcaacaccaacagctgcaacaacaccgttccctctccttcccaact
ccgcctctccaaccccagcctatacctccgccttccaaccccaacgctggcgccagcctc
atggctctcctcagcgccaatcctcctatgcaaccccagcagcagcagcagccgttttcc
gatttcgccgccagttccccccacgccccgccttccgtgggcgcactgacagctgccaat
gccgctgccgccgcgctgatccggctgcctagcagtaagctccccaaggggaggcatttg
actggggagcacgttgtgtacgacgtcgacgttaggttgcccggtgaggtgcagccccag
ctcgaggtcgcgcccatcactaagtacgggtctgatcctaacccggttctgggtcggcag
attgcggtgaataagtcgtatatatgttatgggttgaaacaggggaacatcagggtgctc
aatattcacactgctgggagatccttgctcagaggccacactcagagggtcacagacttg
gcattctttgccgaagatgttcatctcttggcaagtgtttgcatagatggccgtgtctat
gtgtggaagatctctgaaggtcccgatgatgaagataagcctcaaataactgctaatatt
gttattgctatccaaatagtggcagaggagaaagttgaacaccctcaaatttgctggcat
tgccacaaacaagagattttgatagttggtatgggaaaacatgtgctgagaattgacaca
acaaaagttggaaatggtgaagcctttttggctgaggatcctcctaagtgtcctcttgac
aaactcattgagggggttcagcttgtaggaacacatgatggggaggtgactgatttgtca
atgtgccaatggatgacaaatcgattggtatctgcatctcaggatggcacgataaaaata
tgggaagatcggaagatgcaacctcttgcgattttgagaccacatgatggccatcctgta
ttttctgctacattttttactgctccgcaccggcctgatcatattgtccttgtcacagca
ggaccacgaaatcgggaagtgaagctttgggtcgcagcaagtgaagaaggttggcttctc
cctagtgatgccgagtcctggaaatgcactcagacattggagttaaagagttctgctcaa
ccatctctcaaggatgcgttctttaatcaagttgcagcactacctcatgcaggtctgctt
ttacttgcaaatgcccagaggaatgctatatatgctgtgcacttagaatatggtcctaat
cccgaatcaacacgaatggattatatagctgagtttactgtgaccatgcccattctgagt
tttactggaacaagtgatgtattacctcatggtgaacatattgttcaggtttattgtgtt
cagacacaggctattcagcagtatgctttggatttagtacaatgcttgcctccgctgttg
gaaaatgtgggactagagaagtcagattccagtgtttcccgagatgcaatgactgctgaa
gggttcacctctttagactcatctgaaatgtctttagccaattctgctcccaaaacaatg
atacaggcaagcggcactgagagtggtcttgtggcaagataccctttaagctctggccat
attgactcgactatgtctaaagatatcagcagttcaaatattgatgctaaatctgtgaca
ttggcttcttctagtagtgatgctgatattgtctgcgttccttctccacctcttcctttg
agcccaaggttgtccaggaagctttctgatttcaggagtccacagtctaatttgggtgat
catgttgtggaccgacctgttaatgattattcagttgacagacaaatggataccattcac
aggaacttgtctgacccattgaataatgatgaaaagaaaatcaatcaggatgacatttct
agtgtacctaatccttctgccatgtttatgcaaccaactcatctggttacaccgtccgag
ttcgtaaaagccggttcttcctctgaggctaatattattgataaaaagaatgagggagaa
acaatgatccaggacatagtggacgtgggtaatgctgaagtggaagtgaaagtggtaggt
gaaacaagatctaatcaaagcgatgacattggccagcaggggtctcaacaaaacccactt
tacgataataaagaaaaattattttgctctcaggcttcagatcttggtattgagatggct
cgtgaatgttgtgcgatatctggggaaacttgtattacggaggaacctggacaaattgat
tctattgtaggggactcgctggcccaaccttctaacggtggccatggaatccaagacatg
acaaaagatgtccatgagaaggtttctgactcatctacatccatggttgtaccaccatca
cctgcacctaatactaaagggaagaggcagaagggtaaaaattctcaagtatcaggccca
tcttccccatctccgagtgcatgcaattcaactgattcgtccaatgaaccaaatggaagt
tcatccctccaatctactgaaaacgcttctcaaattctggcaatgcaagaaacgctcaat
cagttattgacgatgcaaaaagagatgcagaaacaaatgactatgatggtttctgtccct
gttacaaaagagggtaggaggcttgaggcttccctagggaaaagcatggaaaaagctgtc
aagatccattctgatattttgtggactcgatttcaagaggagaatgcaaaaaatgaaaag
gtgtcacgagaccgtctccaacatattacgggtttgattagtaactttatgaataaggac
ctgccagctatactggagaaaacagtaaagaaggaaattgcttctgttggaccagctgtg
gtccgtgcaatgtctcctgctgtggagaaaataatatcttctactattatggagtcattc
cagagaggagttggtgacaaggcagtgaatcaactggataaatcagttaattcaaaactt
gaagctactgtggccagacaaatccaagcacaatttcagacaaccggcaaacaggtgctt
caggatgcacttagatccagttttgaaacatcagcggttcctgcatttgagatgtcatgt
aaagccatgtttgaacaagtggatgcgacatttcaaaaaggcatgcttgaacattcaact
gcggtgcaacaacgccttgaatctgggcctacatcattggcaatggctctaagggattcc
attaattcagcatcgtcagttactcaaactttaagtagagaagtgcttgagggtcaaaga
aagctgatgacactggcaattgcaagaacaaactctggcacattaaaccctcaccccgtc
cagctgaacagtggtcctttgcttcatgaaaaggttgaggtgccactggatccgacaaag
gagctagcaaggttgatttctgaacggaaatatgatgaggcattcactgtatctctacaa
agaagtgatgtgtctattgtatcttggttatgttctcaggttgatttacatggacttttg
tcaatggtccctcttcctttaagccaaggtgtagtgctttcacttctacagcagttggct
tgcgatattaacaatgatactccccgaaagcttgcgtggatgacagatatcgctgctgcc
ataaattcatcggaccccatgatcacattgcatgtccgaggtatctttgagcaagtttat
caaattttgaatcatcaacggagcttacctacaatgaccggacctgatctctcaagtatc
cgtcttttgatgcatgttgtcaattctgtccttgtaacctgtaaatga
DBGET
integrated database retrieval system
