Lotus japonicus: 130722014
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Entry
130722014 CDS
T04348
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
lja
Lotus japonicus
Pathway
lja03013
Nucleocytoplasmic transport
lja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130722014
03015 mRNA surveillance pathway
130722014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130722014
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130722014
mRNA cycle factors
P-body specific factors
130722014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Cytomega_UL84
Motif
Other DBs
NCBI-GeneID:
130722014
NCBI-ProteinID:
XP_057428583
LinkDB
All DBs
Position
6:complement(51022128..51034156)
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AA seq
1208 aa
AA seq
DB search
MDQHEDECRTGGESNSKQDDEEAVAHLEEIKKSIEAKIALRQSNLNPDRPDSGFLRTLDS
SIKRNTAVIKKLKQINEELREALMDELRTVNMSKFVSEAVAAICDAKLRSSDIQAAVQIC
SLLHQRYKDFAPSLIQGLLKIFSPGKPGDESDTDKNLKAMKKRSSLKLLLELFFVGVIED
GAIFITIIKDLTSVEQLKDRDATQTSLTLLSSFARQGRIFLGLSVNGPEIHEEFFKGLAI
TADQKKVLRKACYAFYDAAAELLQSEHSSLRVMEHENSKILNAKGELSEENVASYEKLRK
SYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEEAISSASGKDSSVVEPIWDDEDTR
AFYECLPDLRAFVPAVLLGETEPKSNEQSVKSQDQSTEILPESDKGQTTRESGEVSTDPS
ALPEGESIQGVKGKEEQEKSKELDREKEKDKEKDKDKDKEKDKDKEKEKEKDNDKKGENE
KDKLRSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFSVPRTSLE
LLPYYSRMVATLSTCMKDVSSILLQMLEEEFNFLINKKDQMNIETKIKNIRFIGELCKFK
IAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNV
KNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRK
LPWSECEPYLLKCFMKVYKGKYGQIHLIASLAAGLSRYHDEFAVAIVDEVLEEIRIGLEL
NDYGMQQRRVAYMRFLGELYNYKHADSSVIFETLYLILVYGHGTPEQDVLDPPEDFFRIR
LIITLLETCGHYFDHGSSKRKLDRFLIHFQRYILSKGALPLDVEFDLQDLFVDLRPNMVR
YSSIEEVNAALVELEEHDRIVSADKASGEKQSEKPPRRTTSSMVVGNGQSIDNGAEDNGV
QDDVNDGEADSGSDVIDEEGHDDDGLDEENHDDGSGTEDEDDDEGPGPASDEEDEVHVRQ
KVTEVDPLEEASFDQELKAVLQESMEQRRLELRGRPTLNMMIPMNVFEGSAKDHHGRGTG
GESGDEALDEDTDGNKEVQVKVLVKRGNKQQTKQMYIPRNSSLVQSTKQKEAAELQEKED
IKRLVLEYNDREEEELNGLGTQPTNWMQSGGYRGGGRGYTSEGTGGRSGGSRHRHHYPGS
GFYYSRRR
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atggatcaacatgaggatgaatgccgcaccggaggcgaaagtaacagcaaacaagatgat
gaggaagccgttgctcaccttgaggaaataaagaagtcaattgaggcgaagatcgcttta
cgacaaagcaatttgaatcccgacaggcccgactcaggatttttaaggacattggattct
agtattaagcgcaacacggctgttattaagaaactgaagcagattaatgaagagctgcgt
gaagcactgatggacgagttacgaactgtcaacatgagcaaatttgtcagtgaagcagtg
gcggctatatgtgatgccaaacttaggagttctgatatacaagcagcagtccagatctgc
tctttgcttcaccaaaggtacaaggactttgcaccaagcctgattcaaggacttctcaaa
atcttctctcctggaaaacctggtgatgaatccgatactgacaaaaacttgaaggcaatg
aagaagcgcagtagtctgaaacttctattggaacttttttttgttggagttattgaagat
ggcgccatttttatcactatcataaaagaccttaccagtgtggagcagctaaaagatcgg
gatgctacacaaacaagtttgacacttctttctagctttgctcgacaagggaggattttt
ctaggactttctgttaatggaccagaaattcatgaagagttttttaaaggtcttgccatc
acggctgatcaaaagaaagttcttaggaaagcatgttatgcattttatgatgctgcagct
gagctacttcagtctgagcattcttcacttcgagtaatggagcatgaaaattctaagatt
ttgaatgcaaaaggtgagctcagcgaggaaaatgttgcttcatatgaaaagcttcgcaaa
tcctatgaccatttgtaccgtaatgtctcatcattagcagaagcacttgatatgcagcct
ccagtaatgccagaggatggacacacaacaagggttactagtggcgaggaggctatttct
tctgcttctgggaaagattcttctgttgttgaaccgatatgggatgatgaagatacacgg
gctttctatgaatgtttacccgatcttagagcttttgttcctgctgtgcttttgggagaa
acggaaccaaaaagcaatgagcaatctgtaaaaagtcaagaccagtcaactgaaatattg
cctgaatcagacaaagggcaaaccacccgtgaaagtggagaggtctccacagaccctagt
gctttgccagagggagaaagcatacaaggagtgaagggtaaagaagaacaagagaagtct
aaagaattggaccgagagaaggaaaaagacaaagaaaaagacaaggacaaagacaaagaa
aaagacaaggacaaagaaaaagaaaaagagaaagataatgacaaaaagggggaaaatgaa
aaggacaaactcagaagtcttgaaggaacaaacttggatgctctgttgcagaggcttcct
ggttgtgtgagccgtgaccttatagatcaactaactgtggagttctgttatctaaattca
aaatcaaatcggaaaaagctcgtgagggcattattcagtgtaccaaggacatctctggaa
ctactaccatattactcacgcatggttgccacactatccacttgtatgaaagacgtctct
tcaattctcttgcagatgttggaggaggaattcaacttcttaataaataaaaaggaccag
atgaacattgagacaaagatcaagaatatcaggttcattggagaactttgcaagttcaag
attgcccctgctggcctagtcttcagttgtttgaaggcatgtttagatgactttactcat
cacaacattgatgtagcttgcaatcttctcgaaacatgtggccggtttctgtatcggtct
ccagaaacttctatacgtatggctaacatgttggagatactgatgcgcttgaaaaatgta
aaaaacttggatcctcgacatagcactttggtagagaatgcatactacctttgcaagcca
ccggaaagatctgcacgagttgctaaagtccgtcctcccttgcatcagtatatcagaaaa
ttacttttctctgatcttgataaatctaccattgagcatgtgctccggcaacttcgtaaa
ttaccatggagtgaatgtgaaccatatcttttaaaatgcttcatgaaggtctacaaaggc
aaatacggtcaaattcacctgattgcatctcttgctgccggtttaagtcgctatcatgat
gagtttgctgtagctatagttgatgaggtcctggaggagattagaattgggcttgaacta
aatgactatgggatgcagcaaagacgtgttgcctatatgcgattcttaggggagctttac
aactacaagcatgcagactcctctgtcatttttgagacactatatctcattcttgtctat
ggtcacgggacaccagagcaagatgtactcgatccacctgaagatttttttcgtataagg
ttgatcattactctgcttgaaacttgtgggcattactttgaccatggctcttctaagagg
aaacttgatcgattcttgatacacttccagaggtatattttaagcaaaggtgcactgcca
ctggatgtcgaatttgacttgcaggatctgtttgtggacttgcgtcccaatatggttcgt
tactcttctattgaggaagtgaatgcagctctagtagaacttgaggagcatgatcgcatt
gtttctgctgataaggccagtggtgaaaaacagtctgagaagcctccaagaaggaccact
tcctccatggtcgttggcaatggacaaagcattgataatggtgcagaggacaacggagtg
caagatgatgttaatgacggtgaggctgattcaggtagcgatgtaattgatgaggaagga
catgatgatgatgggttggatgaggagaatcatgatgatgggtctgggactgaggatgag
gatgatgatgaagggcctggacctgcttctgatgaggaagatgaagtccatgtaagacag
aaggtgacagaggtggaccctctggaagaagccagttttgatcaagagctcaaggctgta
ttacaggagagtatggaacagcgaaggctggagctacgaggccgtcctacattgaatatg
atgattccaatgaatgtatttgagggatctgccaaggatcatcacgggagaggaactggt
ggggaaagtggtgatgaggccctggatgaggatactgatggaaacaaagaagtccaagtg
aaagttcttgtgaaacgtgggaacaagcaacagacaaagcagatgtacatcccacgcaat
tcgtcactggtgcagagtacaaaacagaaagaagcagccgaacttcaagagaaagaagat
attaagaggcttgtcttggagtataatgatagagaagaggaggagcttaatggattaggg
acccagccaacaaactggatgcagagtgggggttataggggtggtggtcgtggctacact
tcagaaggaaccggtggcagaagtggtggatcacgccatcggcatcattatcccggaagt
ggcttctactatagcagaagaaggtaa
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