Lotus japonicus: 130722103
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Entry
130722103 CDS
T04348
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
lja
Lotus japonicus
Pathway
lja04120
Ubiquitin mediated proteolysis
lja04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130722103
04120 Ubiquitin mediated proteolysis
130722103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lja04121
]
130722103
Enzymes [BR:
lja01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130722103
Ubiquitin system [BR:
lja04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130722103
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_16
zf-RING_Vps41
zf-RING_5
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
130722103
NCBI-ProteinID:
XP_057428714
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All DBs
Position
6:46555033..46561539
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AA seq
549 aa
AA seq
DB search
MMRLKTYAGLSLIATLAITYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCTLWQL
TKKLFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLA
QKRVEYIETTPSVTWLSHVRIVSFMGFLLLLDSIFLYSSMKHLIETWQASVSLFFSFEYM
ILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYLCFFFLIFVNYG
IPLHLIRELYETFRNFKVRIADYIRYRKITSNMNDRFPDATPEELNASDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTVAGGQQGSQSDGHRQGTGT
AGSTAQNEAGSGMATDSLSRHEARLQAAAAAASIYEKSYVYPSASSSVCSPGHAFYTPSS
TGFNGEQASSEQAQKQFLIPGQPTNVSFPPMGHYNFLPSQTFAAPVNYGEAFGNDPNIPS
SQLEAHRKFLRWQIEVLEKQLRNLPETKADDRSVDDGTSSSDSRGKLITSSSSVSGHVHH
DEEIQDGKA
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctgaaaacatatgctggtctgagcttgatagcaactttggctatcacatat
catgcatttaacagtaggggtcagttttatccggcgatggtgtatctctcgacttccaag
atcagtttggtgcttcttctcaacatgggtttggttatcatgtgcactctttggcaattg
accaaaaagctgttcctgggttcccttcgggaggcggaggttgagaggcttaatgagcag
tcgtggagggaggttatggaaatcctctttgccattactattttccggcaggacttctcg
gttacgttccttgccatggtcaccgcgctgttattgattaaggctttgcattggttggca
cagaagagagtcgagtacatcgagaccactccttcggtgacttggctatcccatgttcga
atcgtatcttttatgggtttcctcctccttctggatagcattttcttatatagttctatg
aaacatttgatagaaacgtggcaggcttcggtttcactattcttttctttcgagtacatg
atattggcaacaacaacagtttcgatttttgtaaaatatattttctatgtcagtgacatg
cttatggagggacagtgggaaaagaaaccagtcttcacattttacctggaacttatcaga
gacttgcttcacttgtctatgtatctgtgcttctttttcttgatatttgtgaactatggt
attcccctgcacctaatacgggagctgtacgagacatttaggaatttcaaagttcgtatt
gcagattacattagatatcgtaagatcacttcaaatatgaatgatcgctttccagatgcc
acacctgaagagcttaatgcaagtgacgcaacctgcataatctgtcgtgaagagatgact
acagccaagaaacttatatgtggacatctttttcatgttcattgcctccgatcatggctg
gagcggcagcatacttgccctacctgccgagccttggttgtgccaccagaaaatggaaca
actgttgctggagggcagcaaggatcacagtcagatggtcaccggcagggaactgggaca
gctggaagcacagctcaaaatgaagctggcagcgggatggcaactgatagtttgagtcgg
catgaagctaggctccaagctgctgctgctgcagcttcaatatatgagaagtcttatgtt
tatccctctgcatcatcttctgtatgctctccggggcacgcattttataccccttctagt
actggatttaatggagaacaagcttccagtgaacaagcacaaaagcagtttcttatccct
ggtcaaccaacaaatgtatcctttcctccaatgggacactacaattttctgccttcccaa
acgtttgcagcccctgtgaattatggagaagcgtttggaaatgatccaaacatcccaagc
tctcagctggaagctcatagaaaatttctccgatggcagattgaggttttggaaaagcag
ttacggaatcttccagagacaaaagctgatgacagaagtgtagatgacggcacatcatca
tcagatagcagaggcaagcttattacttcatcgtcatctgtttctggtcatgttcaccat
gatgaggagattcaagatgggaaagcctaa
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