Lotus japonicus: 130722214
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Entry
130722214 CDS
T04348
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
lja
Lotus japonicus
Pathway
lja03020
RNA polymerase
lja03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
130722214
09124 Replication and repair
03420 Nucleotide excision repair
130722214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
130722214
03400 DNA repair and recombination proteins [BR:
lja03400
]
130722214
Enzymes [BR:
lja01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
130722214
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
130722214
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
130722214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
130722214
NCBI-ProteinID:
XP_057428854
LinkDB
All DBs
Position
6:64717885..64726084
Genome browser
AA seq
1194 aa
AA seq
DB search
MDLEEEQEYDQQMMEEEDDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI
VDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR
NLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT
ELGECPYDQGGYFIINGSEKVLIAQEKMSSNHVYVFKKRQPNKYAYVGEVRSMAESQNRP
PSTMFVRMLSRTSSKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFS
DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGV
GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR
DVRAYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT
YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV
GSAAYPILEFLEEWGTENFEEISPAIIPTATKIFVNGCWVGIHRDPDMLVRTLRKLRRRV
DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHTLQQRETPEDGGWH
DLVAKGFIEYIDTEEEETTMISMTINDLVQARYNPEDAYSDTYTHCEIHPSLILGVCASI
IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR
QLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGTLVKEDFG
RPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDH
SISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE
DMPWTVEGIVPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK
ALHKCGYQMRGFETMYNGHTGRRLSSTIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ
PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN
SFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLTKEVKSMKDQKKKGA
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggatttggaagaggaacaagagtacgatcagcaaatgatggaggaagaagacgatgaa
gatgaaatcacacaggaagatgcgtgggctgtgatttctgcttacttcgaagagaagggt
ctggttcgtcagcagcttgattccttcgatgagttcatccagaacactatgcaggaaatc
gtcgatgaatctgctgacattgaaattcgacctgagtctcagcataatcccggtcaccaa
tccgattttgcagagacaatttacaagattagcttcggtcagatttacttgagtaagccc
atgatgactgagtctgatggagaaactgccaccttgtttcccaaggcagctaggttaaga
aacctcacctattcagctcctctctacgttgatgtctccaaaagggttatcaagaaaggg
catgatggtgaagaggttactgagactcaggatttcaccaaagttttcatcggcaaggtt
cctattatgcttcggtctagttattgtacgttgtaccagaattcagagaaggatttgact
gagcttggagagtgtccgtatgatcaaggtggatatttcattatcaatgggagtgagaag
gttctcattgctcaggaaaagatgagcagcaatcatgtctatgtcttcaagaagagacag
cctaacaagtatgcttatgtgggtgaagttcggtccatggcagagtctcagaacagacca
cccagtactatgtttgtgcgcatgctctctcgaactagttccaaagggggttcttcagga
cagtatatacgagctactctgccatacattcgaactgaaattcccatcattattgtgttt
cgagcactggggtttgtcgccgacaaagatatacttgaacatatatgctatgatttctcc
gatactcaaatgatggagttgcttcgtccttccctggaagaagcattcgtaattcaaaat
cagcaggttgcccttgactacattggtaaaagaggagcaactgtcggtgtaaccaaggaa
aagagaattaagtatgctaaggagatccttcaaaaggagatgcttcctcatgtaggtgtt
ggagaatattgtgagacgaagaaagcgtactattttgggtatataatccaccgactactt
ctatgtgcacttggccggagggctgaagatgacagggatcattacggcaacaagaggctg
gacctggctggtcctttgcttggtggtctctttagaatgctattcagaaaactaactaga
gatgtcagggcttatgtgcagaagtgtgttgataatggaaaagatgttaacttgcaattt
gctataaaagcaaaaaccatcacaagtggacttaaatactcacttgctactggtaactgg
gggcaggcaaatgctgctggtactagagctggggtttcacaggttctaaatcgtttaact
tacgcctccactttgtctcacttgcggagactgaattcccccatagggcgtgaaggaaag
ttggctaaaccaagacagctgcataattcacaatggggaatgatgtgtccagcagaaacg
ccggaaggacaagcctgtggactggtgaagaatctggctctgatggtctatattacagtt
ggttcagcagcatatcctattctggagtttttagaagaatggggcacagaaaattttgag
gaaatttcacctgcaataattcccacagctacaaagattttcgtaaatggttgctgggtg
ggtatccatcgcgaccctgatatgttggtgagaacattgagaaagctgagacgccgggtt
gatgttaatactgaagttggggttgtcagagatatccgtcttaaggagttgcgcatatac
actgattatggtcgctgcagtcgtcctttgttcattgtggataaacaaaggcttctcata
aagaaaaaggatattcatactttgcaacagagggaaacccctgaagacggtggatggcat
gatctagtggccaagggctttatagaatatattgacactgaagaagaagagactacaatg
atttccatgacaattaatgatcttgtacaagcaaggtacaatccagaagatgcgtattct
gatacttacactcactgtgaaatccacccatctctgattttgggtgtatgtgcttccatc
ataccatttcctgaccacaatcagtccccacgtaatacgtatcagtctgcaatgggaaaa
caagcgatgggaatatatgttaccaactaccagttccgaatggataccttggcctatgta
ttatattatcctcaaaagccactggtcactacaagagccatggagcatctccatttccgc
caactcccagctggaattaatgccattgtggccattgcctgttattctggttataatcaa
gaagattctgtcatcatgaaccaatcatcagtggaccgtggattctttcggtctctgttt
ttccgttcatatagagatgaagagaagaagatgggaacactcgtcaaagaagattttggt
cggccagacagagctaacaccatgggtatgaggcatggttcttatgataagcttgatgat
gatggtcttgcgccaccaggcacaagggtatctggtgaggatgttattattggaaagacc
acccctatatctcaggaggaggcacagggtcaagcattgcgttacacaagacgtgatcac
agcattagcttacgccatagtgaaactggaattgttgatcaagttctgctgacaacaaat
gctgacgggttgaggtttgtgaaagtaagggtgagatctgttcgtataccacagattggt
gacaagttcagtagtagacatgggcagaaggggacagttggtatgacttatacacaagaa
gacatgccctggactgtggaaggcattgtccctgatattattgtcaatccacatgctatt
ccttctcgaatgacaatcggccagcttattgagtgtatcatgggaaaggtggctgcccac
atgggaaaagaaggagatgcaacaccttttacggatgttactgtggataacatcagcaaa
gctctacacaaatgtggctaccaaatgcgtggttttgagactatgtacaacggtcataca
gggaggcgtctcagctcaaccattttccttggccctacatattaccaaagactgaagcat
atggttgatgacaagatccattctcgaggacgaggtcctgtgcagatcctcactaggcaa
ccagctgagggacgctcacgtgatggaggtctccgtttcggagagatggaacgtgattgc
atgatagcccatggagctgctcacttcctaaaggaaagattgtttgatcaaagtgatgca
tatagggtccatgtgtgtgaacgctgtggattgatagctattgcaaatctcaagaagaat
tcttttgagtgcagggggtgcaagaacaaaaccgacattgttcaggtttatattccttat
gcttgtaagctgcttttccaagagctgatggctatggccatagctccaagaatgcttacc
aaggaggtgaaatctatgaaagaccaaaagaagaaaggagcctga
DBGET
integrated database retrieval system
