Lotus japonicus: 130722295
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Entry
130722295 CDS
T04348
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130722295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
130722295
03009 Ribosome biogenesis [BR:
lja03009
]
130722295
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130722295
Spliceosome [BR:
lja03041
]
Complex A
U1 snRNP components
U1 related factors
130722295
Complex B
130722295
Ribosome biogenesis [BR:
lja03009
]
Eukaryotic type
Pre-60S particles
Helicases
130722295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
130722295
NCBI-ProteinID:
XP_057428963
LinkDB
All DBs
Position
6:complement(57733796..57742260)
Genome browser
AA seq
1174 aa
AA seq
DB search
MATAEAASAGLGPRYAPDDPSLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPAPSGPAPV
PSTPSLAPIPGAHSMTAGGMAQQQHGQQMMQQQQQGSYLPQQHGQSMPQQQQQNSLGAQV
TQPQQPSQIAQSAQQQNSQLGQSVPQPGFHQARPQMMQPQGQQQFMQPQGQQMHHQMPSQ
GVRPQHFGQGASQDHGGSHIVQPQTPQFTPQNMHYMAYQQNMVTSRQPNSQQIQPNSFPS
GQPNSQQIQHNIHGQPYDNQQDFKTGFPKTKDTEFKNGSQVGVSPSQYQQRSALPVQNNQ
NVPAEVTSGQVPNAGANAGQPQQFRGFSGSVQQSPSAVQTQQGGSDSFYQHVPNFQNQMN
PGMMHGHPSNVHAIGQKMGHEDKLPGRAGNEYYYNSNKEMPAMGRQQVDMTQMPISRNPQ
DKRIGNAPFQNVMPSGTGIAGNAMHNMFTPPIGGPSPLSSNSLTRPPHIGSSDVTDLSPA
EIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSNPTPIQAQTWPVALQGRD
IVAIAKTGSGKTLGYIMPAFSLLRQRHNNPLNGPTVLVLAPTRELATQIQEEVFKFGRSS
RVSCTCLYGGAPKALQLKELDRGAEIVVATPGRLNDILEMKKINFGQVSLLVLDEADRML
DMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGSVDELAANKSI
TQYVEVVPQMEKQRRLEQILRSQERGSKIIIFCSTKRLCDQLARTIGRSFGAAAIHGDKS
QGERDYVLGQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAG
ATGMAYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQIASRGPANFGKDRAGMNRFDSGG
AVGGRWDNGGRGGMRDGGGGFGGRGGMRDGGFGGRGGFGGRGGTRDGGFGGRGAMRDGPG
GRDGPGGQGGRGDFSAGRGNRGRGFGGPQGGGHVGRGRGDRGPNDRYNMDGRGRGRFDNR
RDVAYRSRGRSRSPERVRTWDYSRSRSRSSSRSRSRSRSWSRGRSRSRSRSRGRSRSYSR
SISPRRSRRSYSRSRSRSYDRGDRSDKQVSDQKDLRAPEAGASDSKMFTVDPSIQGENSS
FGAEPVEQLPVVGSTNPDNPEAAGDLSHQPASDI
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggcagaggcagcttcagctgggcttggcccaagatatgcacctgatgatcct
tcgcttccgcaaccgtggaaggggctgattgatggcagtactggtctgttgtactattgg
aatcctgaaaccaatgttacccagtatgagaagccagctccttcgggcccagcaccggtt
ccttctacgccgagcttggcgcccataccaggggctcattcaatgacggctggtgggatg
gcccaacaacagcatgggcagcagatgatgcaacagcaacagcaggggagttaccttccc
caacaacatggccaatccatgccgcagcagcagcagcagaattctctcggggcgcaggtc
actcagccgcagcagccctctcagattgctcaatccgcacagcagcagaactcacagctt
ggacagtcagtgccgcaacctgggttccaccaggccagaccgcagatgatgcagccccag
ggacaacaacaattcatgcaacctcaagggcagcaaatgcatcatcagatgccatcgcag
ggggtccgcccccaacatttcgggcaaggagcttcacaggatcatggcggctcgcatatc
gtacaaccacagacaccgcaatttactccccagaacatgcattatatggcatatcaacaa
aacatggttacatccaggcaaccaaactcgcagcagattcagcctaactcgtttccatcc
gggcaacctaattcccagcagattcagcataacatacatggtcagccttatgacaatcaa
caagattttaaaacagggtttccgaagacaaaggacacagagtttaaaaatggaagccaa
gttggagtttcaccatctcagtatcaacaaaggagtgcgttgccggttcaaaacaaccag
aatgtccctgctgaagttacttctggtcaagtgcctaatgcgggtgctaatgcaggccaa
ccgcaacagttcaggggcttttcaggcagtgtgcaacaatctccctctgcagttcagaca
cagcagggtggttctgattcattttaccaacacgttcctaactttcaaaatcaaatgaac
ccaggaatgatgcatggtcatccatctaatgttcacgctattggccaaaagatgggacat
gaagacaagttacctggtagagctggtaatgaatattactataactctaacaaagagatg
ccggcaatgggtcgtcagcaggtggatatgacacaaatgcccatttcaagaaatccacag
gataagaggattggcaacgcccctttccaaaatgtaatgcctagtggaactggtattgcg
ggcaatgctatgcataacatgttcactcctccaataggaggaccttcacctctctcaagt
aactccttgacgaggccacctcacattggatcttcagatgttaccgatctatcacctgct
gaaatatactgtcagcagcatgaagttacagcaacgggtgacaacattccaccccccttc
atgacatttgatgctactgggttccctccagagatactgagagagatatattctgctggc
ttctcaaatcccacaccaatacaggctcaaacatggcctgttgcactacagggtcgagac
atagtggcaattgccaagacagggtctgggaaaacattaggctacataatgcctgccttc
tctcttctcagacagcgacacaataatcctcttaatggcccaactgtcttggttttggct
cccacacgtgaacttgcaacacagatccaagaggaagtcttcaaatttggacgatcttca
agagtctcttgcacgtgcttgtatggtggagcacctaaagcccttcagttaaaagagtta
gatcggggagcagaaattgttgttgccacacctggtcggcttaatgatatacttgaaatg
aaaaaaattaactttgggcaagtttcactcctcgtgcttgatgaggctgatcgaatgctt
gatatgggttttgagcctcaaatccgtaagattgtgaatgagattccaccacgtagacaa
actctcatgtacacagcaacctggccaaaagaagttagaaaaattgcgagtgatcttctt
gttaatcctgttcaggttaacattggaagtgtggatgagcttgctgcaaataagtctatt
actcagtacgttgaagttgtcccccaaatggagaaacagaggcgtttggagcagatcctc
agatcccaagagcgaggttctaaaatcataatattttgttccacaaagaggttatgtgat
cagcttgcccgtactattggtcgcagttttggggctgctgcaatccatggagacaagtct
caaggtgagagagactatgttttaggccagtttcggactgggaagtcaccgattttggtt
gccactgatgttgctgcccgtggacttgatattaaggatataagagtggtgatcaactat
gatttccctactggagttgaggactatgttcaccgcattggaagaactgggagggctggt
gctactggaatggcttatacctttttctctgaacaggactggaaacatgcaggtgattta
atcaaagttttggagggtgccaaccagcatgtgcttccagagttaagacagatagcttcg
cggggtccagcaaactttggaaaggatcgggctgggatgaatcggtttgactctggtggt
gctgttggtggccgctgggacaatggtggtcgtggtggcatgagagatggtggtggtggc
tttggtggtcgtggtgggatgagggacggtggctttggaggtcggggtggttttggtggc
cggggtggcacgagggacggtggctttggtggtcgaggggccatgagggatggacctggt
gggagggatggacctggtgggcaaggtgggagaggtgatttctctgctggtaggggaaac
aggggtcggggatttggtggcccccaaggtggtggtcatgttggtcggggcaggggtgat
cgtggtcccaatgatcggtacaacatggatgggcgtggacggggacgatttgacaatagg
agagatgttgcttacagaagtagaggcagaagtcgtagccctgaaagagttcgaacatgg
gactacagcagaagcagaagccgcagcagtagccgtagcagaagcagaagtaggagctgg
agcaggggccgtagtagaagtcgcagccggtctcgcggtcgtagtcgcagctatagccgt
agtatcagtccgcgtcgcagccgtcgaagttatagccgcagtcgcagtcgcagttatgat
aggggtgataggtcagacaaacaggtttctgatcagaaggatcttagggcacctgaagca
ggagcttctgattcaaaaatgttcactgtagatcccagcatccaaggggagaattcatct
tttggagctgaacctgtggagcagctacctgttgttgggagtactaacccagataatcct
gaggctgctggagaccttagtcatcaaccagcttctgatatttga
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