KEGG   Lotus japonicus: 130722494
Entry
130722494         CDS       T04348                                 
Name
(RefSeq) cullin-4
  KO
K10609  cullin 4
Organism
lja  Lotus japonicus
Pathway
lja03420  Nucleotide excision repair
lja04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    130722494
  09124 Replication and repair
   03420 Nucleotide excision repair
    130722494
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:lja04121]
    130722494
   03400 DNA repair and recombination proteins [BR:lja03400]
    130722494
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lja04147]
    130722494
Ubiquitin system [BR:lja04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     130722494
DNA repair and recombination proteins [BR:lja03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      130722494
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      130722494
Exosome [BR:lja04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   130722494
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 130722494
NCBI-ProteinID: XP_057429222
LinkDB
Position
6:62898851..62906430
AA seq 792 aa
MSLPTKRSASASSSPTTAAAAPMKKQKPLSSHSDSDSAAAALMPLDDDLKPSNAVGLMAA
NLARKKATPPQPPKKLLIKLHKAKPTLPTNFEEDTWAKLKSAICAIFLKQPDSCDLEKLY
QAVSDLCLYKMGGNLYQRIEKECEVHISAALQSLVGQSPDLVVFLSLVERCWQDLCDQML
MIRGIALYLDRTYVKQTANVRSLWDMGLQLFRKHLSLSPEVQHKTVTGLLRMIESERLGE
AVDRTLLNHLLKMFTALGIYAESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVETRL
QEEHDRCLIYLDASTRKPLIATAEKQLLERHIPAILDKGFSMLMDGNRIEDLQRIYSLFS
RVNALESLRQAISSYIRKTGQGVVMDDEKDKDMVSSLLEFKASLDTIWEESFFKNEAFCN
TIKDAFEHLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDV
FEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESF
KQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRL
MWQNSLGHCVLKADFPKGKKELAVSLFQTVVLMLFNDAEKLSFQDIKDSTSIEDKELRRT
LQSLACGKVRVLQKTPKGRDVEDDDSFDFNDGFTAPLYRIKVNAIQLKETVEENTSTTER
VFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLER
DKNNPQIYNYLA
NT seq 2379 nt   +upstreamnt  +downstreamnt
atgtctctccccaccaaacgttctgcttctgcttcttcttcacccaccaccgccgccgcc
gctcctatgaaaaagcaaaagcccctttcctcccactccgactccgactccgccgccgcc
gcactcatgcccctcgacgacgatctcaaaccctccaacgccgttggtctcatggccgcc
aatctcgcccgcaagaaagctacccctcctcaaccccccaaaaaactcctcatcaagctc
cacaaagctaaaccaacattgccgacgaatttcgaggaggatacatgggcaaagctgaag
tcagctatttgtgcaatatttttgaagcagccggactcttgtgacttggagaagctttat
caggctgtgagtgatctctgcctttataaaatgggtggaaatctttatcaacggattgaa
aaggagtgtgaagtgcacatatctgcagcgctgcagtctttggtcggacaaagccccgat
ttggttgtttttctatctctagttgagagatgttggcaggacctttgtgatcaaatgttg
atgattcgtggtatagccttgtatctggacaggacgtacgtgaagcaaacagcaaatgtt
cggtcattatgggacatgggcttacaacttttccgtaaacatctttcgttgtctcctgaa
gtgcagcacaaaactgttactggtcttctaagaatgattgaaagtgaaagattaggtgaa
gctgtggatagaactcttctaaaccatcttttgaagatgtttactgctctaggaatttat
gcagaaagctttgagaagccattccttgaatgcacatctgaattttatgctgcggaaggt
atgaaatacatgcagcaatcagatgttccagattacttgaagcatgtggagactaggttg
caagaggaacatgatagatgtttgatctacttggatgcaagtactaggaagccattgata
gcaacagcagaaaaacaacttcttgaacgtcatatacctgccattcttgataagggtttc
tctatgcttatggatgggaatcgcattgaagaccttcagagaatttactcactcttttca
agggtcaatgcccttgagtcactgaggcaggccattagttcatacatcaggaaaactggg
cagggcgttgttatggatgatgagaaagataaagatatggtttcttcccttctggaattt
aaggcttctcttgacacgatatgggaagaaagctttttcaagaatgaagctttctgtaac
accattaaagatgcatttgagcatcttatcaatctccggcagaaccgacctgcggagttg
attgccaagtttttggatgagaagcttcgtgcgggtaataagggaacttcagaagaggaa
ttagagggcacacttgataaagttctggtgttattcaggttcattcagggcaaggatgtg
tttgaggcattttataagaaagatcttgctaaaagactgctgctaggaaagagtgcttct
attgacgcggagaaatctatgatctccaagttgaagaccgagtgtggcagccagttcaca
aacaaactggaaggaatgtttaaggacattgaattatcaaaagaaataaatgagtccttc
aaacagtcctcccaggcgagaacaaaacttccatcagggattgaaatgagtgttcatgtc
ttgacaactgggtactggccaacatatccacccatggatgttagacttcctcatgaattg
aacgtttaccaggatatttttaaagagttctatctaagcaaatacagtggaaggcgtcta
atgtggcaaaattcgttaggtcactgtgtcctgaaggcagattttcccaaagggaaaaag
gagttggctgtctccctgtttcagactgttgttctgatgctattcaatgatgccgagaaa
cttagctttcaagatatcaaggactctactagtattgaggacaaggaactgagaagaact
ctgcaatcacttgcctgtggaaaagttcgtgttcttcaaaagacgccaaagggtagagat
gtggaggatgatgattcatttgattttaatgacgggtttactgctcctctttaccggata
aaggtgaatgcaattcagttgaaggagaccgtggaggaaaatacaagcaccactgagaga
gttttccaagaccgtcaatatcaggttgatgctgctattgtgaggataatgaagactagg
aaagtgcttagtcacacacttcttattactgaactcttccaacagctcaagttcccaata
aaaccagctgatttgaaaaaaaggattgaaagcctgattgacagagagtacctggagagg
gacaagaacaaccctcaaatatacaattacctggcatag

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