Lotus japonicus: 130722527
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Entry
130722527 CDS
T04348
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
lja
Lotus japonicus
Pathway
lja04142
Lysosome biogenesis
lja04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
130722527
04148 Efferocytosis
130722527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lja04131
]
130722527
Membrane trafficking [BR:
lja04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
130722527
Hops complex
130722527
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS18_solenoid_2nd
VPS11_C
Clathrin
TPR_Vps41
zf-C3H2C3
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
zf_RING_Vps8_fungal
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
130722527
NCBI-ProteinID:
XP_057429258
LinkDB
All DBs
Position
6:1711850..1717827
Genome browser
AA seq
968 aa
AA seq
DB search
MYQWRKFEFFEEKYASKCVIPEDDHDHDVDVKNEGKKIDCCSSGRGKVVTGFDDGTVCLF
DRGLKFNYAFQPHSSSVLFLQQLKQRNFLVTIGEDEQLTPQNSALCLKVFDLDKMQSESS
STASPDCVGILRIFTNQFPEAQITSFLVLEEVPPILLIAIGLDNGAIYCIKGDIARERIT
RFKLQVENHSDKTLSSITGLGFKVDGQSLQLFAVTPSSVSLFSLHDQPPRRQTLDQIGSG
LNSVAMSDRSELIIGRPEAVYFYEVDGRGPCWAFEGEKKLLGWFRGYLLCVIADQRTGKH
TFNIYDLKNRLIAHSVLVKEVSHMLYEWGNIILIMTDKSALCIGEKDMESKLDMLFKKNL
YTVAINIVQTQQADAAATAEVLRKYGDHLYSKQDYDEAMAQYIHTIGHLEPSYVIQKFLD
AQRIYNLTNYLEKLHEKGLASKDHTTLLLNCYTKLKDVEKLNLFIKSEDSIGELKFDVET
AIRVCRAANYHEHAMYVAKKAGRHEWYLKILLEDLGRYEEALEYISSLESSQAGMTIKEY
GKILIEHMPVETIQILIRLCTEDGDRRGHSNGLYVSMLPSPVDFLSIFVHHPQSLMEFLE
EYTNKVKDSPAQVEINNTLLELYISNELNFPSVSQVNEGGGYLSGASAKSMNLSAQSNSS
LAGHKSSEEEKVRFQRREKGLCMLKSAWPPEAEHPLYDVDLAIILCEMNAFREGLMYLYE
KMKLYKEVIACYMQSRDHEGLIACCKRLGDSVKGGDPSLWADLLKYFGELGEDCSKEVKE
VLNYIERDDILPPIVVLQTLSRNPFLTLSVVKDYIARKLEQESKMIEEDRHAIDKYQDDT
LAMRKEIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPE
YRSVLEMKRNLEQNSKDQDRFFHQVKNSKDGFSVIAEYFGKGIISKTSNGSTSVLRSGSA
PSSSGFGG
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgtatcagtggaggaagttcgagttctttgaggagaagtacgcttcgaaatgcgtgatt
cccgaggatgatcatgatcatgatgtcgatgtgaagaacgaggggaagaagatcgattgc
tgttctagcggcaggggcaaggtggtgactggttttgatgacggcaccgtttgcttgttc
gatcgaggacttaagttcaattacgcttttcaacctcactcatcgtctgttctttttctt
cagcagctcaagcaacggaactttctggtaactattggggaagatgaacagcttacccct
cagaattcagctttgtgcctgaaggtttttgaccttgataagatgcagtctgaaagttca
agcacggcgagtcctgattgtgttgggatattgcgtatattcactaatcagtttcctgaa
gcacagattacatcctttttagtcttagaagaagtgccacctatactactcatagctatt
ggcttagacaatggcgctatttattgtataaaaggagacattgcacgggagcgtatcacc
cgttttaagcttcaggtggaaaaccattcagacaaaactctttcctctatcactggtctt
gggtttaaggtggatggccaatctctccagttgtttgctgtaactccaagttcagtgagc
ttgttctcattgcatgatcagccaccaagaaggcaaacccttgatcagattggaagtggt
ctaaacagtgttgcaatgagtgaccgctctgagttgataattggtcgaccagaggcagta
tatttttatgaagttgatgggcgtggtccttgttgggcttttgaaggagaaaaaaaattg
ctagggtggtttcgtggataccttttgtgtgttattgcagatcaaagaacaggaaagcat
actttcaacatctatgatctgaaaaatcgtttaatagcccacagtgtgttggttaaagaa
gtttctcatatgctctatgaatggggtaacattatactcattatgactgacaagtcagct
ctatgtattggggaaaaagatatggaaagcaagttagacatgctattcaagaaaaaccta
tatactgtagcaattaatattgttcaaactcaacaagcagatgctgcagccaccgctgaa
gtgctaagaaaatatggggatcatctgtatagcaagcaagactatgatgaggcaatggcc
cagtacatacatactattggtcaccttgaaccttcttatgtgattcagaagtttctggat
gctcaaagaatctacaacctcacaaattacttggaaaagctacatgagaagggtcttgct
tctaaagatcacaccacacttctattaaactgttataccaaattgaaagatgttgaaaag
ttaaatctgttcattaaaagcgaagatagcattggggaacttaagtttgatgtggaaaca
gcaatcagggtttgtcgcgctgccaattaccatgagcatgcaatgtatgtcgcaaagaag
gctgggaggcatgaatggtacttgaagatcttgcttgaagatcttggtagatatgaagag
gccttggaatatatttctagtcttgaatcaagtcaggcagggatgacaataaaggagtat
ggtaaaattctaatagagcacatgccagtggagacaattcaaattctcataaggctttgc
acggaggatggcgacagaagaggacactcaaatggtttgtatgtgtctatgttgccgtct
cctgttgattttcttagcatttttgtccatcatcctcagtctcttatggaatttcttgag
gaatataccaataaggtcaaggactcacctgctcaagtggagattaacaataccctttta
gagttgtatatatccaatgaattgaactttccttcagtatcacaagttaatgaaggtgga
ggttaccttagtggagcatctgcaaaatccatgaatttaagtgctcagtccaatagctcg
cttgcgggtcacaaaagttcagaagaggaaaaggtccggtttcaaaggcgtgaaaaggga
ctgtgcatgcttaagagtgcatggcctccagaggcggaacatccactttatgatgttgat
ttagctattatattatgtgaaatgaatgcgttcagagaagggcttatgtatttgtatgaa
aagatgaaactctataaagaagtgattgcttgctatatgcagtcacgtgaccatgaaggg
ttaattgcatgttgcaaaagattgggcgattcagttaaaggaggggatccatctctttgg
gctgatctacttaaatattttggcgagcttggagaagattgctccaaagaagtaaaagaa
gttttgaattacattgagagggatgatatcttgccccccatagttgtccttcaaactcta
tccagaaatccattcctcacactttctgtggtcaaggattacattgcacggaaacttgag
caggaatctaagatgatcgaggaggacagacatgctattgacaaatatcaggatgataca
ctggcaatgagaaaagagattcaagatctgagaacaaatgctagaatttttcagcttagc
aaatgcactgcatgcactttcacccttgatctgcctgctgtgcacttcatgtgcatgcac
tcattccatttgcgctgccttggcgataatgaaaaagaatgccctgagtgtgcccctgaa
tataggtctgtcttagaaatgaagagaaacttagaacaaaattctaaggaccaggacagg
ttttttcatcaagttaaaaactctaaagacgggttttctgtcattgccgaatatttcggg
aaagggatcatcagcaaaacaagtaatgggtccacttctgttctcagatctggaagtgca
ccatccagcagtggcttcggaggttaa
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