Lotus japonicus: 130722542
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Entry
130722542 CDS
T04348
Name
(RefSeq) uncharacterized protein LOC130722542
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130722542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130722542
03041 Spliceosome [BR:
lja03041
]
130722542
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
130722542
Spliceosome [BR:
lja03041
]
Complex B
Other components
Prp19-related factors
130722542
Complex C
130722542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_19
TPR_2
ARM_TT21
ARM_TT21_C
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
130722542
NCBI-ProteinID:
XP_057429276
LinkDB
All DBs
Position
6:complement(65249002..65254086)
Genome browser
AA seq
918 aa
AA seq
DB search
MATISQELYPSQDDLLYEEELLRNPFSLKLWWRYLIARSESPFKKRFIIYERALKALPGS
YKLWYAYLRERLDLVRNLPVTHSHYDSLNNTFERALVTMHKMPRIWIMYLQTLTHQKLVT
RTRRTFDRALCALPVTQHDRIWEPYLLFVSQKGIPIETSLRVYRRYLKYDPSHIEDFIEF
LVNSSLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTRHANEVSGLNVDAIIRG
GIRKFTDEVGRLWTSLAEYYIRRGLHEKARDVFEEGMSTVVTVRDFSVIFDSYSQFEESM
LAYKMEEMSMSDEEDEEEDGVQDKVEEEEEDIRFKVKSSLEEFEKAIHGFWLNDKNDIDL
RLARFDYLIKRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMQ
AVGKPHTLWVAFAKLYEEHKDLTNARIIFDKAVQVNYKTVDNLASVWCEWAEIELKHNNF
KGALELMRRATAEPSVEVKRRVAADGNEPVQMRLHKSLRLWTFYVDLEESLGNLESTRAV
YERILDLRIATPQIIINYAYFLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVK
RYGKTKLERARELFENAVETAPADQVKPLYLQYAKLEEDYGLAKRAMNVYAQATKAVPGN
EKLSMYEIFIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAELEKSLGEIDRAR
GIYTFASQCADPRSDPDFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYL
MQKDQTVNLDEAKDKLKQAGVPEDEMAALERQLAPAVDNGLSKDRKVGFVSAGVESQSDG
GIKARANHEDIELPEDSDSDDDDDKIEIAQKDVPSAVFGGLIRQRDEDENNGEVDGAKEN
ENESRLGALERMKRLKRN
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgatttcgcaggagctgtacccatcgcaagacgatcttctctacgaagaagag
cttctccgaaaccccttcagcctcaagctatggtggcgttacctcatcgctcgatctgaa
tctcccttcaagaagcgtttcatcatctacgagcgtgccctcaaagctctccccggaagc
tacaagctctggtacgcttacctccgtgaacgcctcgacctcgttcgcaacctccccgtc
actcactcccactacgattccctcaacaacaccttcgagcgtgctctagtcactatgcac
aagatgcccaggatctggatcatgtatcttcaaaccctaactcaccagaagctcgttacg
cggacgcggaggacgttcgatagagctctctgcgcgctaccggtgacccagcatgaccgc
atttgggagccttaccttctgtttgtcagccagaagggtatccccattgagacctcgctt
agggtttatcgcaggtatttgaaatatgacccttctcatattgaagatttcattgagttt
ttggttaattctagtttatggcaagaggctgctgagaggttagcttctgtgttgaatgat
gatcagttttattccataaaagggaaaaccaaacacaggctttggttggagctttgtgat
ttgcttactaggcatgccaatgaggtttctgggttgaatgtagatgctatcattaggggt
gggattaggaagtttactgatgaggtgggtaggctttggacttcactggcggagtattac
attaggaggggtttgcatgagaaggccagggatgtgtttgaggagggtatgtccacggtc
gtaacagtcagggatttcagtgtcatatttgattcgtactctcagtttgaagagagcatg
cttgcttataagatggaagagatgagtatgagtgacgaggaggatgaagaggaagatggg
gttcaggacaaggtggaggaggaagaggaagatattaggttcaaagtgaaatcatccctg
gaggagttcgagaaggctatacacgggttttggttgaatgacaaaaatgacatagacttg
agattggctcgattcgactacctaataaagaggaggccagaattggctaatagtgtgctt
ttgcgtcagaatcctcataatgtagaacagtggcaccgacgggtgaagctttttgagggt
aatcctactaagcagattctcacttacacggaggctgtgaggacagttgatcccatgcag
gctgtgggaaagcctcatactttgtgggttgcttttgctaaactttatgaggagcacaaa
gatctcaccaatgctcggatcatatttgacaaggcagtacaggtcaactacaaaactgtg
gataatctggctagtgtctggtgtgagtgggcagaaattgagttgaaacacaacaatttt
aaaggagcacttgagcttatgaggcgagctacagcagagccatcagttgaggtcaaacgt
agagtggctgctgatgggaatgaacccgtacagatgaggctgcataaatctttgaggctg
tggaccttttatgttgatttggaggaaagcctgggtaatttagagtctactcgggcagtt
tatgagcggatattggatttacgtatagccacaccacaaataatcattaattatgcatac
tttctggaggaacacaaatactttgaagatgcttttaaagtttatgaaagaggtgtgaag
atatttaagtacccacatgttaaagatatatgggttacatatctgtctaaatttgtgaag
agatatggaaagacaaaattggagagagcgagagaactgtttgagaatgcagttgaaacg
gcccctgctgatcaagtgaaacctctctacctgcaatatgctaagctggaagaggactat
ggacttgctaagagagctatgaatgtttatgctcaagcaactaaagctgtacctggtaat
gaaaagctaagcatgtatgaaatattcattgctcgtgcagctgagatatttggtgtcccc
aaaacaagggagatctatgagcaggctattgaatctggtcttcccgacaaggatgtcaaa
actatgtgtttgaagtatgctgagctggaaaaaagtttgggtgaaattgatcgtgcccgt
ggaatatacacatttgcctctcagtgtgcagatccgcgatctgatccagacttttggaac
aagtggcatgaatttgaagttcagcatggaaatgaagatacattcagagaaatgcttcgc
attaagcgcagtgtctctgcaagctacagccagacacattttatactgcccgagtatctg
atgcagaaggatcaaactgtaaatctggatgaggcgaaagacaaattgaagcaggctggg
gtccctgaggatgaaatggctgctttagaaaggcaattagccccagcagttgacaatggt
ctttcaaaagacagaaaagtagggtttgtgagtgctggagtggaatcacagtcagatgga
ggaataaaggcccgtgcaaatcatgaggatatcgagttacctgaagatagtgactcggat
gatgatgatgacaagattgagattgcacagaaagatgttccttctgctgtttttggtggt
ttgatcagacagagagatgaggatgaaaacaatggagaagtagatggtgcaaaagaaaat
gaaaatgaaagccggcttggtgcacttgagagaatgaaaaggctaaaacgaaactaa
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