KEGG   Lotus japonicus: 130722719
Entry
130722719         CDS       T04348                                 
Name
(RefSeq) THO complex subunit 3 isoform X1
  KO
K12880  THO complex subunit 3
Organism
lja  Lotus japonicus
Pathway
lja03013  Nucleocytoplasmic transport
lja03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130722719
  09122 Translation
   03013 Nucleocytoplasmic transport
    130722719
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lja03019]
    130722719
   03041 Spliceosome [BR:lja03041]
    130722719
Messenger RNA biogenesis [BR:lja03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     130722719
Spliceosome [BR:lja03041]
 Complex C
  Other components
   EJC/TREX
    130722719
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    130722719
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_Prp19 WD40 WD40_CDC20-Fz Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I Beta-prop_CAF1B_HIR1 WDR55 WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_WDR19_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_Vps41 DSE1_N Beta-prop_WDR90_POC16_2nd Beta-prop_EML eIF2A WD40_RFWD3 Beta-prop_HPS5 NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_1st Tricorn_2nd WDR90_beta-prop_4th TRM82_WD PAC11 Beta-prop_WDR41 Beta-prop_DCAF12 B-prop_COPA_B_2nd Beta-prop_Nup120_160 WD_LRWD1 DUF7099 TP_0598_N Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 130722719
NCBI-ProteinID: XP_057429525
LinkDB
Position
6:39213711..39219376
AA seq 331 aa
MEEQTPFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHVEQHGHGKVKDIE
LKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT
HVAVGNRDDELTILDVRKFKPIHKRKFNYEVLTSFKFKPIHKRKFNYEVNEIAWNMTGEM
FFLTTGNGTVEVLTYPSLRPLETLMAHTAGCYCIAIDPTGRYFAVGSADSLVSLWDISQM
LCVRTFTKLEWPVRTISFNHTGELIASASEDLFIDISNVQTGRTVHQIPCRAAMNSVEWN
PKYNLLAYAGDDKNKYQADEGVFRIFGFENA
NT seq 996 nt   +upstreamnt  +downstreamnt
atggaggaacaaaccccatttaagaatctccatagcagagagtattctggtcacaagaag
aaggtgcactctgtggcctggaattgcattgggaccaaacttgcctctgggtctgtggat
caaactgctcgaatctggcatgttgagcaacatgggcatggtaaagtcaaagatattgaa
ttaaaaggccacactgatagtgtggatcagctatgctgggatcccaaacatgccgatctg
attgcgactgcatcgggtgacaagaccgttcgtttgtgggatgctcgtagtggaaaatgc
tcacaacaggcagaacttagtggggagaatatcaacattacctacaaacctgatgggact
catgtagctgtgggcaatagggatgatgaattaacaatactggatgttaggaagttcaaa
ccaattcataagcgcaaattcaactatgaggtattaactagttttaagttcaaaccaatt
cataagcgcaaattcaactatgaggtaaatgagattgcttggaacatgacaggcgagatg
ttctttctaactacaggaaatgggactgtggaagtactgacgtacccatctcttcgacct
cttgaaaccctcatggctcatacagccggttgttattgcattgcaattgacccaacagga
agatattttgctgttggaagtgctgattcccttgtcagcctgtgggatatctcacagatg
ctctgtgtgcgcacctttacaaagctggaatggcctgtccgtacaatcagtttcaatcat
actggggaacttattgcttcagcaagtgaagacttgttcattgatatttctaatgttcaa
actggacgaacagtgcatcagattccttgtagagctgccatgaacagcgttgagtggaat
cctaaatacaatttacttgcatatgctggtgatgacaaaaacaagtatcaggctgatgaa
ggtgtttttcgaattttcggttttgaaaatgcttag

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