Lotus japonicus: 130722761
Help
Entry
130722761 CDS
T04348
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130722761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
130722761
Spliceosome [BR:
lja03041
]
Complex B
Other components
Prp19-related factors
130722761
Complex C
130722761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH_3
zf-CCCH
RRM_YTH1
zf-CCCH_4
zf-CCCH_10
RRM_occluded
RRM_3
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
130722761
NCBI-ProteinID:
XP_057429571
LinkDB
All DBs
Position
6:complement(48867228..48872397)
Genome browser
AA seq
485 aa
AA seq
DB search
MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGR
DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREFFAE
EHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMATLDAPEDESIKTLYVGGLDARVT
EQDLRDNFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELANKLVIKGLRLKLMWGR
PQSAKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMVYYNNPPPQGRSYYPSM
DPQRMGAVTANQDSPPGGPSGSGENKPGPEKQPMQHYPRPMMPPPPGQYHHHQYYPPYGG
YMQQPVPPYQQYPPQYNAVVAPSQPPAANHPYQHSMQPGSSQTGSAPAGPAPAETGTSAS
GSQQQ
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcgcataggttgctcagggaccatgaagccgacggttgggaacgctccgacttccct
atcatctgtgaatcatgcctcggcgatagcccttatgttcgaatgacaaaagccgagtat
gacaaggagtgcaagatttgtacacggccatttactgtttttagatggagacctggtcgg
gatgcaagatataagaaaactgagatctgccagacatgtagtaaattgaaaaatgtttgt
caagtgtgccttctggatcttgaatatggacttccagttcaagtccgggacacagctctc
agtatcgattccaatgatgcaattccaaagagtgatgttaatagggagttttttgctgaa
gagcatgaccgccgggctagagctggtctagattatgaatcctcttatggtaaagtacgt
cctaatgatactatactgaagcttcaaaggacaacaccatattacaaaagaaaccgagcg
cacatttgcagtttctacataaggggtgagtgtactaggggagctgagtgtccttataga
catgagatgccggtgactggggagctgtctcaacaaaatatcaaagatcgttactatggg
gtgaatgatccagtggctatgaagctacttggcaaggcaggagagatggcaactctggat
gctcccgaggatgagagcatcaaaactctttatgttggaggacttgatgctagggtcact
gagcaggatttgcgggataacttctatgcccatggagaaattgaatccatcaaaatggtt
ctccaacgggcttgtgcttttgtaacctacacaacccgagaaggtgcagaaaaggcagca
gaagaactcgccaacaaactggttatcaagggcctgaggctaaagcttatgtggggcagg
cctcagtcagcaaaacccgagtccgatggctcggatcaagcaaggcagcaggcatctgtg
gctcatagtggattgttgcctcgagctgtgatatcacagcagcagaaccaggaccaaacc
caaggaatggtttactataacaatccacctccgcagggaagaagctactacccttcaatg
gatcctcagagaatgggtgcggttactgcaaaccaagacagtcctcctggcggaccttct
gggtcaggggagaacaaacccgggccagagaagcagccaatgcaacattatccccgtcca
atgatgccgcctccacctggccaatatcatcatcatcagtattatcctccatatggtggt
tatatgcaacaaccagttcccccttatcaacagtatccaccacaatacaatgctgtcgtg
gctccatcccagcctccagctgcaaatcatccctatcagcattctatgcaaccagggtct
tcacagacggggtctgcacctgctgggcctgcaccagccgaaactggaacatcagcgtca
gggtctcagcagcaatga
DBGET
integrated database retrieval system
