Lotus japonicus: 130722878
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Entry
130722878 CDS
T04348
Name
(RefSeq) protein VACUOLELESS1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
lja
Lotus japonicus
Pathway
lja04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
130722878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lja04131
]
130722878
Membrane trafficking [BR:
lja04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
130722878
Hops complex
130722878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
WD40_WDHD1_1st
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
130722878
NCBI-ProteinID:
XP_057429717
LinkDB
All DBs
Position
6:46313715..46325533
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AA seq
848 aa
AA seq
DB search
MANVSVAAEWQLLYNRYYRKPELYPMRWRHVDLARNKLAAAPFGGPLAVIRDDSKIVQLH
AESALRKLRLFSSSGQPLADTVWRHPGGRLIGMSWTDDHTLICVVQDGTIYRYDVHAHLI
EPNLSLGKECFESNVADCAFWGNGVVCITEANQLFCIADFKNPESVKLADPGILEPPRCM
AVIEPQYTISGNVEVLLSVGEGEEDAAVLAVEEDGVQRLGVEMLRGPLQKMVVSRDGKWL
ASFTHDGKLLVTTSDLTEIIIERECESALPPEQLAWCGMDAVLLYWDDMLLMMGPDGEPV
SYLYDEPIFLIPECDGVRILSNTSMEFLQRVPDSTVSIFTIGSTSPAALLYDALDHFDRR
SAKADENLRLIRSSLPEAVEASVDAAGHEFDVSRQRTLLRAASYGQAFCSNFQRDRIQEM
CKILRVLNSVRSPEIGIPLSIQQYKLLTPYVLIGRLINAHQHLLALRISEYLGMNQEVVI
MHWACAKITASLAIPDATLLDILLDKLKLCKGISYAAVAAHADKNGRRKLAALLVEHEPR
SSKQVPLLLSIGEEDIALIKATECGDTDLVYLVLFHIWQKRQPLEFFGTIQARALARELF
VTYARCYKHEFLKDFFLSTGQLQDVAFLLWKESWALGKNPMASKGSPLHGPRIKLIEKAQ
NLFAETKEHTFESKAAEEHAKLLRIQHELEVTTKQAIFVDSSISDTIRTCIVLGNHRAAT
KVKTEFKVSEKRWYWLKVFALATIKDWVALEKFSKEKKPPIGYRPFVEACIEANEKGEAI
KYIPKLADPRERAESYARIGMAKEAADAASQAKDGELLGRLKLTFSQNAAASSIFDTLRD
RLSFPGAS
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggccaatgtctccgtagccgcggagtggcagctcctctacaaccgctactaccgtaag
cccgagctctacccaatgcgctggcgccacgtcgacctcgcccgcaacaaactcgccgcc
gcccccttcggcggccctctcgccgtcatccgcgacgactccaagatcgtccaactccac
gccgagtccgccctccgcaaactccgcctcttctcctcctccggtcaacccctcgccgac
accgtctggcgccaccccggcggccgcctcatcggcatgtcatggaccgacgaccacact
cttatctgcgtcgtccaggacggcacaatctaccgctacgacgtccacgctcatctcatc
gagcctaacctatccctcggtaaggagtgcttcgagagcaacgtcgccgattgcgctttc
tggggaaacggcgtcgtttgcatcactgaggccaatcagcttttctgcatcgccgatttc
aaaaaccctgagtctgtgaagcttgctgatccggggattcttgaaccgccgcggtgtatg
gctgtgattgagccgcagtacactatttccggcaatgttgaggttctgcttagcgttggc
gagggagaggaggatgccgcggtgcttgctgtcgaggaggacggcgtgcagcggctcggt
gttgagatgctccggggaccgctgcagaagatggtggtgtcgcgcgacggcaagtggctc
gcgtcgttcacgcacgacgggaagctcttggtcactacgtcggatttgactgaaatcatc
attgaaagggagtgtgagtcagctcttcccccggagcaacttgcttggtgtggcatggat
gctgtgctgctttactgggatgatatgcttttaatgatgggtcctgatggagagccagtt
tcatacctttatgatgagccaatctttcttattcctgagtgtgatggagtgaggatattg
tccaacactagcatggaatttctacagcgcgtgcctgattccactgtttcaatcttcaca
attggcagcacatcacctgcagctttgctatatgatgcgttggatcattttgataggcgt
agtgcaaaggcagatgaaaatttgagattgataagatcatctcttcctgaggctgttgaa
gcatctgttgatgctgcaggtcatgaatttgatgtttcacgccaacgaactctcctgagg
gcagccagttatgggcaggccttttgcagcaattttcaacgtgatcgtatccaagagatg
tgtaaaattctgcgggtcttgaattcagtgcgcagccctgagattggcattcctcttagt
attcagcaatataagttgcttactccatatgttctgattggtcgcctgattaatgctcac
caacatctgcttgccctgcggatatcggaatatcttggaatgaatcaagaggtggtgata
atgcactgggcatgtgctaagataactgcttcattggcaattcctgatgctactcttctg
gatattctgcttgataagttaaaactatgcaaaggcatatcctatgcagcagttgctgct
catgcagacaaaaacggccggcggaagttagctgccttgcttgttgaacatgaacctcgt
tcatctaaacaggtacctctcctgttaagcataggagaagaagatatagccttgataaag
gcaactgaatgtggtgatacagaccttgtttaccttgtactttttcatatttggcaaaag
aggcagccattagagttctttggaactatacaagccagagcattagcacgtgagttattt
gtaacatatgcacggtgctataaacatgaatttttgaaggacttcttcttatcaactggg
caacttcaagatgtggcattccttctttggaaagaatcatgggcacttggaaaaaatcca
atggcaagcaaaggatctccacttcatggtcctcgaataaaattaatcgagaaggctcag
aatctttttgcagaaaccaaggaacatacctttgaatcaaaggcagctgaagagcatgca
aaactgttgagaattcagcacgaacttgaagtgaccacaaagcaggccatttttgtggat
tcaagtataagtgatacaatccgtacttgtattgtcttgggaaatcatcgagctgcaaca
aaagtgaaaacagaatttaaggtgtctgagaaaagatggtattggcttaaagttttcgct
ttggctacaatcaaggattgggttgccctggaaaaattttcgaaggagaagaaacctcca
ataggttacaggccgtttgtggaagcatgcattgaagcaaatgaaaagggagaagctatt
aaatatatcccaaaacttgcagaccctcgagaaagagccgagtcatatgctagaattggt
atggctaaggaagctgctgatgctgcttcacaggcaaaagatggtgaattacttggtcgg
ttaaaattgacattttcacaaaatgcagcagcttcgtctatatttgatacgcttcgagat
cggttgtccttcccaggtgcctcgtga
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