Lotus japonicus: 130723051
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Entry
130723051 CDS
T04348
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
lja
Lotus japonicus
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lja03009
]
130723051
03036 Chromosome and associated proteins [BR:
lja03036
]
130723051
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130723051
Ribosome biogenesis [BR:
lja03009
]
Eukaryotic type
Pre-60S particles
Helicases
130723051
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
130723051
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
YIEGIA_cap
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130723051
NCBI-ProteinID:
XP_057429958
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All DBs
Position
6:47654131..47662314
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AA seq
604 aa
AA seq
DB search
MTTTILRRSSSIFSRRFFAAFTSVEALHLHHRRSLIAAVTRINGLSDLGARAFHAKPGLL
NFHSSLVSPSAQPALDHDYAHENDGFTANSSDEGLEIAKLGISQEIVDALAKKGIAKLFP
IQRAVLEPAMKGQDMVGRARTGTGKTLAFGIPILDKIIQSNAKHGQGRDPLALVLAPTRE
LARQVENEFKDAAPNLSTICLYGGTPISNQMRELDYGVDIAVGTPGRIIDLLNRGSLNLN
AVQFVVLDEADQMLQVGFQEDVEKILSRLPPQRQTLMFSATMPPEIKNIIRNYLNSPLTI
DLVGDSNQKLADGISLYSIASSAYTKAGILAPLITEHANGGKCIVFTQTKRDADRLSYMM
SKSLKCEALHGDISQAQRERTLAGFRNNYFNVLVATDVASRGLDIPNVDLVIHYDPPNNS
EIFVHRSGRTGRAGKKGAAILVYTEVQSRAISTIERDVGCKFTELPKIDVPSGSVDMLSG
MGGGRFGPSGGMRSGGPGYGGGSGFSRSGSYSNPGFSRPGYGNSGGTGRSGGSGTGFGGS
SGFDRSGSSSNPGFNRTGYGNSGNTGRFGGFSDNSSAKPTFGGPSSGSYGSSQNRYSGFG
TFDD
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccacgatcctcagaagatcctcttccatcttctcacgccgcttcttcgccgcc
ttcacctccgtcgaggcgctccacctccaccaccgccgcagcctcatcgccgccgtcact
cgcattaacgggctctccgacctaggagccagagcatttcacgcgaaacccggactgttg
aacttccactcctcgctggtttctccttctgcgcagcctgccttggatcacgattacgcg
cacgagaacgatggcttcactgcgaacagcagcgatgaaggactggagattgcgaagctc
gggatctcgcaggagatcgttgatgctctcgcgaagaaagggatcgccaaactctttccc
attcagagagctgtgctggaacctgcgatgaaagggcaggatatggtcggtcgagctaga
acaggaactgggaagactcttgcttttgggatacccatcttggataagattattcaatct
aatgctaagcatgggcaaggaagggaccctttggctttggttttggcaccaaccagagaa
cttgcgcgacaggttgaaaatgagttcaaggatgccgcacctaacttgagcacaatctgt
ctttatgggggtacgcccatcagcaatcaaatgagggagcttgattatggtgtagatatt
gcagttggcacgcctggtcgaattattgatcttcttaaccgaggttcattgaatttgaat
gctgttcagtttgttgttctcgatgaagctgatcagatgcttcaagtaggatttcaagaa
gacgtggagaagatcttgtcgaggttgcctccacaacgtcagactctcatgttctcagcg
acaatgccacctgagataaagaatatcatccgcaattacctaaacagccccctaaccatt
gatcttgttggagattctaatcagaaattggcagatggaatttcgctgtactctattgca
tccagtgcatatactaaagcgggaattcttgcgcccctgataacagaacatgcaaatgga
ggaaagtgtattgttttcactcaaaccaaacgtgatgctgatcgattatcatatatgatg
tcaaaaagccttaaatgcgaggccttgcatggagatatttcgcaagcacagagggaaaga
actcttgctggcttcagaaacaactactttaatgttctagtggcaactgatgttgcttca
cgtgggcttgatattccaaatgttgatcttgtaatacattatgatcctccgaataattct
gagatatttgttcatcgatctggacgaactgggcgggctggtaagaaaggagctgctatt
cttgtttatacagaagttcagtccagggctataagtactattgagcgtgatgttggatgt
aaatttaccgagctaccaaagattgatgttccaagtggatctgtagacatgttaagtggc
atgggtggtggtcgattcggcccttcaggaggtatgaggtctggtggtccaggttatggt
ggtggttctggatttagccgttctggaagttatagtaaccctggatttagccgacctggc
tatggaaattcaggtgggacgggaagatctggtggtagtggtacaggctttggtggcagt
tctggatttgaccgctctgggagttctagtaaccctggatttaaccgaactggttatggg
aattcaggtaacacgggaagatttgggggattttctgataactcttctgctaaaccaaca
tttggtggacctagctctggtagttatggttcaagccaaaatcgctacagtggttttggt
acttttgatgactga
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