Lotus japonicus: 130723056
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Entry
130723056 CDS
T04348
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
lja
Lotus japonicus
Pathway
lja03030
DNA replication
lja03420
Nucleotide excision repair
lja03430
Mismatch repair
lja03440
Homologous recombination
lja03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130723056
03420 Nucleotide excision repair
130723056
03430 Mismatch repair
130723056
03440 Homologous recombination
130723056
03460 Fanconi anemia pathway
130723056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lja03000
]
130723056
03032 DNA replication proteins [BR:
lja03032
]
130723056
03400 DNA repair and recombination proteins [BR:
lja03400
]
130723056
Transcription factors [BR:
lja03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
130723056
DNA replication proteins [BR:
lja03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
130723056
DNA repair and recombination proteins [BR:
lja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
130723056
MMR (mismatch excision repair)
130723056
DSBR (double strand breaks repair)
HR (homologous recombination)
130723056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
DUF223
DUF5651
Motif
Other DBs
NCBI-GeneID:
130723056
NCBI-ProteinID:
XP_057429961
LinkDB
All DBs
Position
6:53262439..53265429
Genome browser
AA seq
625 aa
AA seq
DB search
MSVNLTANAIPTIIGGDVNAKPLVQVLDVALVSGGNNSQQQQRYRVVLSDAVSSHQAMLA
AQLNDHVRNGRVKKGSVVQLIDYICSTLQNRKIIVVLNMETIILDCEIIGNPKSFMNSDL
PILRNAAENLPRSSGNNLAAKNASHNVQNFRPTVQPAYQPPPVYKGRGAIVKNEAPARVI
PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNSVVDR
FYDSIEAGKVYLISRGSLKPAQKNFNHLKNEWEIFLDSNSTVELCPDEDGSIPRQQFSFR
PISDIENTDSNSILDVIGVVTSVNPSVPILRKNGMETQRRVLNLKDSSGRSVELTLWGEF
CNREGQRLQEMVDAGVFPILAVKAGKVSDFSGKSIGSISTTQLFINPDFPEAHSLRDWFD
QVGKDSASLSISKDFIPGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRATISFMKTDTFC
YTACPLMIGDRQCSKKVTRSGNMSWQCDRCNQEFEECDYRYLLQAQILDHTGLTWVTAFQ
EAGEEIMGCSAKELYFLKNEEQDDDRFGEIIKSKLFNHFVFKLKIKEELYGDEQKVKITV
VKADQVNYSSESRYMLDLISKFCRQ
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgaatctgacggcgaacgcgattccgacgattatcggcggcgacgtgaacgcg
aagccgctagtccaggttctcgacgttgccttagtctccggcggcaacaactctcagcag
cagcagaggtaccgtgttgtgctctctgacgccgtttcgtctcaccaagccatgctcgcc
gctcagctcaatgaccatgtccgaaacggccgagtgaagaagggttccgtcgttcagctt
atcgattatatatgctctactctccagaatcgcaagattattgtggtgcttaacatggaa
actataattctggattgcgagatcattgggaacccgaagtcatttatgaattctgattta
ccaattttgagaaatgctgcggagaatttgcccaggagtagtggtaataatttggctgct
aagaatgcaagtcataatgtgcagaatttcagaccaacggttcaaccggcataccaacca
cctcctgtttacaaaggtcgtggtgcgattgtgaaaaatgaggcaccggcacgcgtcatt
cctattgctgctttaaatccttatcaaggtaggtgggctatcaaggcaagggtaacagct
aaaggggatctgcgccgctataataatgctcgtggagatgggaaagtcttctcgtttgat
cttcttgattctgatggaggtgaaatacgagtaacatgctttaattctgtagttgatcgc
ttctatgattcaattgaggctggtaaagtttacttgatatccagaggtagcttgaaacct
gcacagaagaatttcaaccatttgaagaatgaatgggaaatttttttggattcaaattca
actgttgagctttgcccagatgaggatggttctatacctagacagcagttctccttcagg
ccgataagtgacattgaaaatactgacagtaactccatccttgatgttatcggggtagtg
acttctgtgaatccttcagttcccatcttgaggaagaatggaatggaaactcagagaaga
gttttgaatctaaaagatagttcaggcaggagtgttgagttaacactttggggtgaattc
tgcaatagggaaggacaaaggcttcaagagatggtagatgctggggttttccccattttg
gcagtcaaagctgggaaggttagtgacttcagtggcaagtctattggttctatttctact
acacagcttttcattaatccagatttccctgaggctcatagcttaagagattggtttgat
caagttggaaaagattctgcttctttatcaatttctaaggacttcattcctggaggacca
aagaatgagatacgcaaaactgtgtctcagatcaaagatgaaggtctgggacggtcagac
aagccagactggataacagtcagggcgaccatatcattcatgaagactgatacattttgt
tacacagcttgccctctgatgattggagatcgacagtgcagtaagaaagtaactaggtca
gggaacatgagttggcaatgtgatagatgcaaccaagagtttgaggagtgtgactaccgg
taccttctccaagctcaaatcctggatcacacaggattaacttgggtaactgctttccag
gaagcaggggaagagattatggggtgctccgcaaaggagttgtacttcttgaaaaatgaa
gagcaggatgacgacaggtttggagaaataatcaagagtaaactcttcaaccattttgta
ttcaagctgaaaataaaagaggaattatatggtgacgaacagaaggtgaagattacagtg
gtcaaggcagatcaggtgaattattcttcagagagtagatacatgcttgatttgatttcc
aaattttgtaggcagtga
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