Lotus japonicus: 130723209
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Entry
130723209 CDS
T04348
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
lja
Lotus japonicus
Pathway
lja03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130723209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
130723209
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
130723209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
SOG2
Motif
Other DBs
NCBI-GeneID:
130723209
NCBI-ProteinID:
XP_057430159
LinkDB
All DBs
Position
6:60478218..60484423
Genome browser
AA seq
547 aa
AA seq
DB search
MDLQLKSSCSGCGSTADLYGSNCKHMTLCLTCGKTMAENRAKCRDCGATLNRLIREYSVR
ASSPSDKHYCIGRFMTGLPDFSRKKSAENKWSLQKDGLQGRQITDTLREKYKNKPWVLED
ETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKN
RKKTADGYERWMMKVANNGPAAFGEHGRFDDKESITGGGRSRKKTGEDDEGNVSDKEDRE
EEDDEEEAERKNRFGQNKKGGGDDDDDEGPRGGDLDDDDFDVEKGDDWEHEEIFTDDDEA
VGNDPGEREDLAPEVPAPPEIKQDDDEEEEEDRDNEEGGGLSKSGKELKKLLGRSGGMDE
SDAEDEDDDEDDMDDEDGVPPVTAIKQKDAPKEEPVDNSPSKTMATGSARGTPSSSKSSK
GKRKSNEEAKPSNGATPKKVKTENESKSSTKDVSGSASKSNPPPKSTPQPSSSKAGPSTT
ASGPVSEEEIRAVLSQKTPVTTQDLVAKFKARLRSPEDKQAFAEILKRISKIQKTANGSS
YVILRDK
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcaattgaagtcaagctgtagcggatgcggttcaaccgccgatctctacggc
agcaattgcaagcacatgactctctgcttgacctgcggcaaaaccatggcggagaatcgc
gccaaatgccgcgactgtggcgccaccctaaatcgcttgattcgagaatacagtgttcgt
gcaagttctcccagtgataaacactactgtatcggaagattcatgactgggttgcctgat
ttttcaaggaagaaaagtgctgaaaacaagtggtctctgcagaaggatggactacagggt
cgccaaattactgatactttaagggagaagtacaagaacaagccttgggtcttagaggac
gaaacaggtcagtcccagttccagggtcatctagaaggttcacaatcagctacctattat
cttctgatgaaagaaaagaaggagtttgttgccattcctgctggttcttggtacaacttt
aacaaggttgcacaatataagcaattgactttggaggaagcggaagagaaaatgaaaaat
agaaagaaaactgctgatggatatgaaagatggatgatgaaagtggcaaataatgggcct
gctgcatttggtgaacatgggaggtttgatgacaaggaaagcattacaggtggagggaga
agccgtaaaaaaactggtgaggatgatgaaggtaatgtctctgataaagaagatagagaa
gaggaggatgacgaggaggaggcagaaaggaaaaatagatttggacagaataagaaagga
ggtggtgatgacgatgatgatgaaggtccaaggggaggggaccttgatgatgatgacttt
gatgttgagaagggtgatgattgggaacatgaagagattttcactgatgatgatgaagcc
gtcggcaacgatccaggggaaagggaagatttggctcctgaagtccctgctcctcctgaa
atcaagcaggatgatgatgaggaggaggaggaggatcgagataatgaagaggggggaggt
ctgagtaaatctgggaaagagctgaagaagctgcttgggcgatctggtggtatggatgaa
tcagatgcagaggatgaggatgatgatgaagacgatatggatgatgaggatggtgttcct
cctgtgactgctataaagcagaaggatgcacctaaggaagaacctgttgacaacagccct
tcaaaaaccatggcaacaggatctgctcgtggaacaccttcttcttcaaagtcttctaag
gggaagagaaaatcaaatgaggaagcaaagccatccaatggtgcaacaccaaagaaggtg
aagacagaaaatgaatcaaaatcatctaccaaagatgtaagtgggtctgcttctaaaagt
aatccacctccaaaaagtacaccacaaccatcatcatcaaaagctgggccttctaccaca
gcttctggacctgttagtgaggaagaaattagggctgttttgtcacagaagaccccagtg
accacgcaggatcttgtagctaaatttaaggcaagattaagatctccagaggacaagcaa
gcatttgctgagatcctgaagagaatctctaagatacagaagactgcaaacgggtccagt
tatgttatcctgagagataagtga
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