Lotus japonicus: 130723354
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Entry
130723354 CDS
T04348
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
lja
Lotus japonicus
Pathway
lja03013
Nucleocytoplasmic transport
lja03015
mRNA surveillance pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130723354
09122 Translation
03013 Nucleocytoplasmic transport
130723354
03015 mRNA surveillance pathway
130723354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130723354
03041 Spliceosome [BR:
lja03041
]
130723354
03009 Ribosome biogenesis [BR:
lja03009
]
130723354
03012 Translation factors [BR:
lja03012
]
130723354
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130723354
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130723354
mRNA cycle factors
Stress granule specific factors
130723354
Spliceosome [BR:
lja03041
]
Complex C
Other components
EJC/TREX
130723354
Ribosome biogenesis [BR:
lja03009
]
Eukaryotic type
90S particles
Helicases
130723354
Translation factors [BR:
lja03012
]
Eukaryotic type
Initiation factors
eIF-4
130723354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
UvrD-helicase
TniB
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-GeneID:
130723354
NCBI-ProteinID:
XP_057430342
LinkDB
All DBs
Position
6:55470269..55474120
Genome browser
AA seq
406 aa
AA seq
DB search
MATASVVPANRRRGPTVTDDMDFETTEGVKAIGSFEEMGIKDDLLRGIYQYGFEKPSAIQ
QRAVTPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSVREVQVLILSPTRELASQTEKV
ILAVGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRTIKMLV
LDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHEILEITNKFMTDPVRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVS
SMHGDMPQRERDAIMAEFRAGSTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI
GRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcgtctgtggtaccggcgaaccggcgacgaggtcccaccgtcacggatgac
atggacttcgagaccacggagggtgttaaggcgattggaagcttcgaagagatggggatt
aaggacgacctgctccgcggaatctaccagtacggtttcgagaaaccctcggcgattcaa
cagcgtgccgtcacgcccatcatccagggtcgcgatgtcatcgctcaggctcaatctggc
accgggaaaacctccatgatcgctctcaccgtgtgtcaagttgttgatacctccgtcaga
gaggtgcaggtgttaatcttgtcgcctacgagggaactggcgtcacagactgagaaggtt
atattggctgttggggattttattaacatacaagcgcatgcttgcgttggaggtaaaagt
gttggggaagatataaggaaacttgagcatggagttcacgtggtgtctggaactcctggc
agagtttgtgacatgatcaagaggagaaccttgcgcacaaggactatcaagatgctagtt
cttgatgaatctgatgagatgttgagcagagggtttaaagatcaaatttatgatgtgtat
agatatctgccccctgaccttcaggtttgcttgatttctgctacacttccccatgaaata
ttggagataacaaataagttcatgacagatcctgtgaggatccttgtaaaacgtgatgaa
ttgacattggagggaatcaagcaatttttcgttgcagttgagagggaagagtggaaattt
gatactctatgtgatctttatgatactctcactatcacccaagctgtcatattctgcaac
actaagagaaaggtggactggttaactgaaaagatgcgtaataataatttcactgtctca
tcaatgcacggcgacatgcctcagagagaaagagatgcaattatggcagaatttcgtgct
ggatcaacccgtgtactaattacaacagatgtttgggctcgtggtcttgatgtgcagcag
gtttctttagttattaattatgaccttcccaataaccgtgagctgtacattcatcggatt
ggtcgctctggacgttttggacgaaagggtgttgcaataaattttgtcaagagcgatgat
atcaagatcttgagagatattgaacaatattacagtactcagattgatgaaatgcccatg
aatgttgctgatcttatatag
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