Lotus japonicus: 130723636
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Entry
130723636 CDS
T04348
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130723636
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130723636
Enzymes [BR:
lja01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
130723636
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130723636
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
DNA_pol_A_exo1
PHD_ash2p_like
Motif
Other DBs
NCBI-GeneID:
130723636
NCBI-ProteinID:
XP_057430725
LinkDB
All DBs
Position
6:40998560..41003304
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AA seq
713 aa
AA seq
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MKPWNLHLPSSPLSRALSRALSSAASAFPLKTVTTANFEPSLVDLRRHVRSSDFVAIDLE
MTGITSAPWRESLEFDRSDVRYLKVRDSATRFAVVQFGVCPFRWDPSNNSFLAYPYNFYV
FPRQELAGFGPCNEFLCQTTSMDFLAKYQFDFNVCIHEGISYLSREQEREAIRRLNSTYD
SERPDICKLKDVRDIPLLSMADTLFTARMKSKFSEWRDGLLHEQNQEDRIQEISEDSKEQ
FQVMFFKLQPALRLNGFTSHQLKLIQLVIRKNFKDLYYVSVNTEASGSQQIVLYTDSKDE
LNLIMKEVKDENHRMEEMKIQTAVGFRHVIDLLSSEQKLIVGHNCLLDIAHVYNKFIRPL
PETPEEFVASVNKCFPNIVDTKILLNTNSMLQGRMRGSRKSLASAFSLFCPQIAAGSGNT
EPGSPSHVKVDIEVDDSRSSTWNPGGKHEAGYDAFMTGCVFTQLCSDLGVDFKLHESSKE
LALNEKLQKYVNHLYISWMHGDIIDLSTGDKVADSSPSYSLKRRYPQILFENIVIMWGFP
SKLKANEIRNCISLVFGSSSVVSIYHLDSTAVFVQFSKTNLVSDFLLLKDTLERSDGPIL
VLHPLAKLLEGGNTCAANYDAYREICGSTLSESLFADQAKAVGITWKTKLMECKVTLGSE
EHENQSEQGNVNTAMKFVGKTKPNTIDQLRNSPPHGQVSPFEIEDSCAAEANL
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatggaatcttcatcttccttcgtcaccactctcacgtgcgctatcacgtgca
ctcagctccgccgcatcggcgtttcccctgaagacggtaaccaccgccaacttcgaaccc
tcgctggtggatctccggcgccacgtccgctcctctgacttcgtcgccatcgacctcgag
atgaccggcatcaccagcgccccctggcgcgagtccctcgagttcgatcgctccgacgtc
cgctacctcaaggtcagagactccgccaccaggttcgccgtcgttcaattcggcgtctgc
cccttccgatgggacccctccaacaactccttcctcgcttatccgtacaatttctatgtg
tttccacgccaggagcttgcgggttttggtccatgtaatgagtttctctgccagactact
tcaatggatttcttggctaaataccagtttgattttaatgtctgcatacatgaaggaata
tcttatttatccagagagcaagaaagggaagcaataaggaggttgaattcgacttacgat
agtgagaggccagacatttgtaaattaaaagatgtcagggacataccattgctcagcatg
gcagacactttgttcactgcacgaatgaaaagtaagttcagtgaatggcgtgatgggtta
ttacatgagcaaaatcaagaagacagaattcaagaaatttcagaagactcaaaagaacaa
tttcaagtgatgttctttaagttgcagcctgctcttaggcttaatggattcacctctcat
cagcttaaattgattcagttggtcatcagaaagaacttcaaagatctttattatgtcagt
gtgaacactgaggcttctggttcacagcaaattgttctatatacagactcaaaggatgaa
ctgaacttaattatgaaggaggtgaaagatgaaaatcacaggatggaagaaatgaagatc
cagactgcagttggttttcgtcatgttattgatctcctttcatcagaacagaagttgata
gttggccacaactgtcttctggatattgctcatgtctacaacaaatttatcagacctctt
cctgagactcctgaagagtttgttgcctctgttaacaagtgctttccaaacattgttgat
accaaaatactcctaaacactaattctatgctccaaggaaggatgagagggtccagaaaa
tcactggcctctgcattttctttgttttgtccacaaattgctgcaggctcaggaaacact
gagccaggttcaccatcacatgtgaaagtggacattgaagttgatgattcaagatcatcc
acctggaaccctggaggtaagcatgaagcagggtatgatgctttcatgaccggatgcgtc
ttcacccaattatgtagtgatttaggagtggattttaaactccatgaatcttcaaaagaa
ttagcccttaatgagaaactacagaagtacgttaatcatctatatattagttggatgcat
ggagacattattgatctaagtactggtgataaggttgcagattcttcaccgagctatagc
ctcaagaggcggtacccacaaattttgtttgagaacattgttattatgtgggggtttcct
tctaagctcaaggcaaatgaaataagaaattgtatatctctagtttttggttcaagttct
gtagtttctatctaccacttggactcaactgcagtgtttgtccagtttagcaaaacaaat
ctggtttctgattttcttttattgaaggacaccttagagagaagtgatggtccaatcttg
gttttgcatccgctggcaaaacttttggaaggtggaaatacatgtgctgctaattatgat
gcttacagagaaatttgtggttcaaccttatcagaaagcctgtttgctgatcaggccaag
gcagttggtataacatggaagaccaaattgatggaatgcaaggtaacattggggagcgaa
gaacatgaaaatcaaagtgaacaaggtaatgtgaatacagctatgaagtttgtaggaaag
accaagccaaacacaatagatcagttgagaaattcaccacctcatgggcaggtctcacct
tttgagattgaagattcttgtgccgcagaagccaacttgtga
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