Lotus japonicus: 130723657
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Entry
130723657 CDS
T04348
Name
(RefSeq) WD-40 repeat-containing protein MSI4-like
KO
K10752
histone-binding protein RBBP4
Organism
lja
Lotus japonicus
Pathway
lja03082
ATP-dependent chromatin remodeling
lja03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130723657
03083 Polycomb repressive complex
130723657
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lja03036
]
130723657
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
130723657
Histone modification proteins
HAT complexes
HATB complex
130723657
HDAC complexes
Sin3A-HDAC complex
130723657
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
130723657
PRC2.2
130723657
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
130723657
Heterochromatin formation proteins
Other heterochromatin formation proteins
130723657
Chromatin remodeling factors
NuRD complex
130723657
NuRF complex
130723657
NuRF complex (fruit fly)
130723657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_EML
WDR55
Beta-prop_DCAF12
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
EIF3I
ANAPC4_WD40
Beta-prop_WDR35_TULP_N
DDRGK
OATP
Motif
Other DBs
NCBI-GeneID:
130723657
NCBI-ProteinID:
XP_057430751
LinkDB
All DBs
Position
6:54070348..54075752
Genome browser
AA seq
507 aa
AA seq
DB search
METPTPPSQQGVVKKKETRGRKPKPKDDKKDEHQKTPKETKKAQQQQHHHQQQQQQQQSS
VDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPN
TLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQSSRIVATH
TDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHIDNAEFALAMCPTEPYVLSGGKDKT
VVLWSIEDHVTSASDSKSAGSIIKGEGYDKTADGPSVGPRGIYRGHEDTVEDVTFCPSSA
QEFCSVGDDSCLILWDARVGCSPVVKVEKAHDADLHCVDWNPHDDNLILTGSADNSVRMF
DRRNLTSNGVGAPIHKFEGHKAAVLCVQWSPDKASVFGSSAEDGLLNIWDYEKVGKKIER
AGKSINTPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLI
YRPEEEVLAELEKFKAHVVACASKSEK
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggagactccaactcctccatctcaacaaggcgtggtgaagaagaaggaaaccagaggc
cgaaagccaaagccaaaggatgacaagaaagatgagcatcagaaaacccccaaggagacc
aagaaagctcagcaacaacagcaccatcatcagcagcaacagcaacagcaacaatcttct
gtggatgagaagtacacacaatggaagtctcttgttcctgtcctctatgactggctcgcc
aaccacaacctcgtttggccctctctctcttgccgatggggtcctcagctggagcaagct
acctacaaaaatcgccaaaggctctacctttctgagcagactgatggtagcgttccgaat
actctggtgattgcgaattgtgaggttgttaagcctagggttgcagctgctgagcacatt
tctcagtttaatgaggaggcgcgctccccatttgtgaagaagtacaagaccatcatacat
cctggcgaggtgaacagaattcgggaactgccgcagagttctaggatagtagccactcat
actgacagtcctgatgtccttatttgggatgttgaaagtcagcctaaccgccatgcagtc
cttggagctacaaactctcgtccggatttgattttaactggacatatagataatgcagaa
tttgctcttgcgatgtgcccaactgagccctatgtgctttctggaggaaaggataaaaca
gtagtgttgtggagtattgaagaccatgtaacatctgcctcagactccaaatctgctggg
tcaattatcaaaggcgaaggttacgacaagactgctgatggcccttctgttggaccacga
ggtatctaccgtgggcatgaagatactgttgaagatgtgactttttgtccttctagtgca
caggagttttgtagtgttggagatgattcctgtctcatcttatgggatgcacgtgttggt
tgtagtcctgtggtgaaggttgaaaaagctcatgatgctgatcttcactgtgttgactgg
aatccccatgatgataatctgattcttactggatcggcagataattctgttcgtatgttt
gatcgccgcaatctcacctctaatggagttggggcacctattcataaatttgagggtcac
aaagctgctgttctctgtgttcagtggtctccagacaaagcatctgtatttggaagttca
gcagaagatggtctcttaaacatctgggactatgagaaggttggtaaaaagatcgagcga
gcaggaaaatcaataaatactcctccagggttgtttttccaacatgctggtcatagagac
aaagtagttgacttccactggaatgcatatgatccatggacgattgtcagtgtgtctgat
gactgtgaaagtactggtggagggggaacattgcagatatggcgcatgagtgacctgatc
tacaggccagaggaggaggttttggcagagcttgagaaatttaaagctcatgtggtggcg
tgtgcttcaaagtctgaaaaatga
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