Lotus japonicus: 130723698
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Entry
130723698 CDS
T04348
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
lja
Lotus japonicus
Pathway
lja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130723698
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130723698
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
130723698
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
SET1_RBD
Motif
Other DBs
NCBI-GeneID:
130723698
NCBI-ProteinID:
XP_057430798
LinkDB
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Position
6:complement(4305915..4309834)
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AA seq
453 aa
AA seq
DB search
MEADNCKIFIGGISWDTNQRRLRQYFSAYGKVMESVIIKDRTTRRARGFGFVAFSDPAVA
EEVLKKKHKIDGKMVDVKKAAPKNGSPGPYRSTKIFVGGLASTVTESDFKKYFDQFGTIK
DLVVMCDPNTQRPRGFGFITYDSEEAVDSVFLRSFHELNGKMVEVKRAVPKELSPGPNHS
PLSVYNYDLSGVNSFINGFTQGYCPSNVGGYGLCVDGTVSPIARGRIGFPLFGSGYGMSP
NFEPVLNHEFRGNENFYSDLSVSRGLNPDYFDSSKRFASSIGYDGGNGRSNSFFSSGTQN
LYGSGGLSYGTSSANSTAYIGLGGGTVRGNTISNTGVGVSLSLSNGNLGFRGENNNSGLG
IGGYRRSSDADIPLTSSYSAPNGGFDGPFSEFYSSSSVNDDPIYRSSNFEPDGFDPFGYG
LGVVASDVSAKCSPGYVGSYTVNKRQPNKGIAT
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggaagcagataattgcaaaatatttattggtggaatatcatgggatacaaatcaaagg
cgactcaggcaatattttagtgcttatgggaaagtcatggaatcagtgatcataaaggat
cggacaacacgtagagcccgtggatttggctttgttgccttttcagacccagctgttgct
gaagaagtgttgaaaaagaagcacaagattgatggaaagatggtcgatgttaagaaagct
gcacctaagaatggttctccaggtccataccgctcgacaaagatatttgttggaggttta
gcatcaacagttacagagagtgatttcaaaaagtactttgatcaatttgggacgataaaa
gatctggttgtgatgtgtgaccccaacactcagaggccaagagggtttggatttatcact
tatgattctgaggaagctgttgactcagtctttctcaggagtttccatgaattgaatgga
aaaatggttgaggtcaagcgcgcagttcctaaggagctatcaccaggaccaaaccacagc
ccacttagtgtatataactatgatctcagcggagtcaatagcttcataaatggcttcact
caaggatattgtcctagtaatgttggagggtacggactttgcgttgatggtacagttagt
cctattgctagaggtcgaattggatttcctctattcggttctggttatggaatgagtcca
aattttgagcctgttttgaaccatgaattccggggaaatgaaaatttctatagtgatctt
agcgtaagccgaggattaaatcctgactattttgacagttcaaagagatttgcaagttct
attggatatgatggtggtaatggcagaagcaattctttcttcagctctgggactcaaaat
ttgtatgggagtggtggcctaagttatggaacaagttctgccaattccactgcatacatt
ggattagggggtgggacagttagaggaaacacaattagcaacactggagttggtgtatca
ctatcactcagtaatggcaacctcggctttagaggtgaaaacaacaatagtggtttgggg
attggagggtatcgaagaagcagtgatgctgatatacccctaacatcatcttactctgcg
ccaaatggtggttttgatggacctttttctgaattttacagtagcagttcagttaatgat
gaccccatttatcggtcttcgaattttgagccagatggatttgatccctttggttatgga
cttggcgtcgtagcttcagatgtttctgccaaatgttctccaggttatgttggaagttat
acagtcaacaagaggcagccaaataagggaattgctacatag
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