Lotus japonicus: 130723861
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Entry
130723861 CDS
T04348
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
lja
Lotus japonicus
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
130723861
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130723861
Spliceosome [BR:
lja03041
]
Complex C
Other components
Complex C specific factors
130723861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
AAA_30
AAA_19
HA2_N
AAA_7
nSTAND3
ResIII
ABC_tran
TrwB_AAD_bind
AAA_23
AAA_29
AAA_16
AAA_11
Motif
Other DBs
NCBI-GeneID:
130723861
NCBI-ProteinID:
XP_057430987
LinkDB
All DBs
Position
6:complement(64098472..64106991)
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AA seq
698 aa
AA seq
DB search
MQFWKPGTEKPEARVVDDGEGGVLFIPGPNSLSSSSSSGYGYASIEKQRLRLPVYKYRTA
ILYLVETHATTIIVGETGSGKTTQIPQFLKEAGWASGGRLIACTQPRRLAVQAVASRVAQ
EMGVQLGDEVGYTIRFEDLTKPDVTVIKFLTDGVLLREMMADPLLTKYSVIMVDEAHERS
ISTDILLGLLKKIQRRRPELRLIIASATIEAKSMADFFRTRKKRREPETEEHGLKVEPAI
LSVEGRGFNVQINYAEEPVQDYVQAAVSTVLLIHEREPPGDILLFLTGQDDIDAAVQLLN
DQNNGKHSSGLIILPLYSGLPRADQELVFSTIPRGKRKVVISTNIAETSLTLEGIVYVVD
SGFSKQRFYNPISDIENLVVAPISRASARQRAGRAGRVRPGKCYRLYTEEYFLNHMANEG
IPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPEAMIRAVEVLYSLGVMDDDAKLTSP
TGFQVAEIPLDPMISKMMIASSQLGCSEEIITIAAVLSVQSIWIAGRGIQKESDEAKLRF
AAAEGDHVTFLNLYKGFHQSGKSSQWCHKNFVNYHAMKKVLEVREQLRRIAQRIGLVLKS
CESDIQVVRKAVTAGFFANACNLEAYSHNGMYKTLRGSQEVYIHPSSVLFRVNPKWVIYT
SLVSTDRQYMRNVMTIDPSWLLEAAPHFYQLQQPNLRH
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgcagttctggaagccagggacggagaagccggaggctcgggtggtcgacgacggagaa
ggcggtgttctattcatccccggtcccaattctctctcttcttcctcttcttctggatat
ggatacgcctccatcgagaaacaacggctgcgattgcctgtctacaagtaccgcactgcc
attctctacctcgtcgagactcacgccaccaccatcatcgtcggcgagactggcagtggc
aaaaccactcaaatccctcagttcctgaaggaagcaggttgggcttccggtggccgcctc
attgcgtgtactcaacctcgacgactagctgttcaggctgttgcttccagagttgcccaa
gagatgggtgtccagctcggtgatgaagttggctacaccattaggtttgaagatcttacc
aaacctgatgtgacggtgattaaatttttgactgacggggtgctcctgagggagatgatg
gctgatcccctcttgaccaaatacagtgttataatggtggatgaagctcatgaaaggtcg
atttcaactgacattttgcttggactattgaaaaagattcaacggcgtcgaccggagttg
cgattgattatcgcatctgccactattgaagcgaaatcaatggcagacttcttccgtacg
agaaaaaaacgccgggaacctgaaactgaggagcatggactgaaagtggaacctgcaata
ttatcagttgagggaagaggcttcaatgttcaaattaattatgctgaggaaccagtccaa
gactatgttcaggctgctgtgtcaacagtactcttgatccatgagcgggagccacctgga
gacattctgctgtttcttactggccaagatgatattgatgctgctgttcagttactcaat
gatcaaaataatggaaaacactcttcaggattgataatattgcctctgtattcaggactt
ccacgtgctgaccaggagctagtgttttccacaattcctagaggaaagaggaaagtagta
atttctactaatatagcagaaacatcactcacattggagggcattgtctatgttgttgac
agtggattctcaaaacaacggttctacaatccgatttcagatatcgaaaatcttgttgtg
gcaccaatatctagggcttctgctaggcaaagagctggtagggctggacgagttcgacca
ggaaagtgttacaggctatatacagaagaatattttttaaaccacatggctaatgaggga
attccagagatacagaggtcaaatctcgtctcctgtgtaatccagttaaaggctttgggg
attgataatatcttgggctttgactggccagcgtctccatctcctgaagcaatgatccga
gcagtagaagttctctactcacttggggtcatggatgatgatgctaagcttacttcacct
actggatttcaagttgcagaaattccactggacccaatgatctcaaaaatgatgatagct
tccagccaacttgggtgttcagaggagataatcacaattgctgctgttctttctgtccaa
tctatctggatcgcaggaagagggatacaaaaggaatcagatgaagcgaaattgagattt
gctgctgccgagggtgaccatgtaacgttccttaatttatacaaggggttccatcagtct
ggtaaatcttcacaatggtgtcacaaaaatttcgtgaactatcatgccatgaaaaaggtt
cttgaagttagagaacaactcaggagaattgcacagaggataggcttagtcttaaagtct
tgcgaaagtgatatacaggtggtgagaaaagcagttactgctggctttttcgctaatgca
tgcaatcttgaggcatacagccataatgggatgtacaagacattaagaggatcacaagaa
gtttatattcacccatcgtcggtgctattcagagtaaatccgaagtgggttatatacact
tctcttgtatcaactgatcgacaatacatgcgtaatgtcatgacaatagatccatcgtgg
ctattggaggctgctcctcacttctaccagctacaacaaccgaatcttcgtcactaa
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