Lotus japonicus: 130724135
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Entry
130724135 CDS
T04348
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA cleavage factor Im 25 kDa subunit 1-like
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
lja
Lotus japonicus
Pathway
lja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130724135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130724135
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
130724135
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GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
130724135
NCBI-ProteinID:
XP_057431291
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Position
6:53427846..53429944
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AA seq
223 aa
AA seq
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MGELGSFTAAAEPNTLHHQNSETDDQNLELDIYPLNCYYFGSKHAIPSKPHSSPHHLQRV
KSNYAARGMRTCVEAVILVELFKHXHLLVLQVRNSIYQLPGGRLRPGESDIDGLKRKLAR
KLSLSEEGDGAEWEVGECLGTWWRPDFETLMYPFLPPNAKQPKECTKLFLVRLPESRKFM
VPKNLRLLSVPLCQIHENHKTYGPIISGVPQLLSKFSFNMIES
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atgggggagttggggtctttcactgcagcagcagaaccaaacactctccatcatcaaaac
agcgaaaccgatgatcagaatctggaactagacatataccctttgaactgttactatttt
ggttccaaacatgccattccctccaaaccacactcttcacctcatcatcttcaaagggtc
aaatcaaactatgctgctcgtggaatgcgaacttgtgtggaagctgtgatactggttgag
ttgttcaaacatncccatttgctggtgttgcaagtgaggaactccatctaccaacttcct
ggtggtcgtttaagaccaggtgaatcagatattgatggattgaagcgtaagctagcaagg
aagctctcccttagtgaagaaggggatggggcagaatgggaggtgggtgaatgccttgga
acgtggtggagacctgattttgaaacattaatgtatcccttcttgccacctaatgcaaaa
cagccaaaggagtgtacaaaacttttccttgtaaggctgccagagagtcgaaagttcatg
gtaccaaagaacctgaggttgctttcagtccctttgtgccaaattcatgaaaatcacaag
acatatgggccaattatatcaggggttcctcagctgctctcaaaattctctttcaatatg
attgaatcttaa
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