Lotus japonicus: 130724243
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Entry
130724243 CDS
T04348
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 28-like
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
lja
Lotus japonicus
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
130724243
03009 Ribosome biogenesis [BR:
lja03009
]
130724243
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130724243
Spliceosome [BR:
lja03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130724243
Ribosome biogenesis [BR:
lja03009
]
Eukaryotic type
Pre-60S particles
Helicases
130724243
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ARTD15_N
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
130724243
NCBI-ProteinID:
XP_057431419
LinkDB
All DBs
Position
6:complement(44758895..44765925)
Genome browser
AA seq
755 aa
AA seq
DB search
MSPSFVFEPPSDEEIEYSEEEVEEEEEEDEEEEAESGSEPEEQERKELRASKAKKQTQSP
WDFAKYSESVAEEHARRSTTSVDEKITALRLRSTPLIHAPDPEEDNSSESEPDQQEDYRP
EEEEEEEGNAGDNKPYFASSDGTSFHADSFMELNLSRPLLRACEALGYSKPTPIQAACIP
LALSGRDICGSAITGSGKTAAFALPTLERLLFRPKRMHAIRVLILTPTRELAVQVHSMIE
KLAQFTDIKCCLIVGGLSTKVQEVALRSMPDIVVATPGRMIDHLRNSMSVDLDDLSVLIL
DEADRLLELGFNAEIHELVRMCPKKRQTMLFSATMTEEINELIKLSLSKPLRLSADPSTK
RPATLTEEVVRIRRMREVNLEAVLLAMCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKA
AELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIVGVQTVINFACPRDLTSYVHR
VGRTARAGREGYAVTFVTDNDRSLLKGIAKRAGAKLKSRIVAEQSILKWSQIIDQMEDQI
AEVLQEEREEIALRKAEMEAAKAENMIAHREEIFSRPKRTWFVTEKEKKLVAKAAKDSMD
TGKSSRKEVISAQEAEDLKMKEKRKREREKNLPRKKRRKLEAAREMLEDDEGYDEKPVEG
KGANKKEKAGISLVDIAYRRAKAVKAVKRALDSGKIVKKVKPKSSHSSRKTPSRPEEMRD
LFQTEIKDRKPRKGGSGAGKKPKSSFKSKSRYKRK
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgtcacccagcttcgtcttcgaacctcccagcgatgaagaaatcgaatactccgaagaa
gaagtagaagaagaagaagaagaagatgaagaagaagaagccgagtcaggatcagaacca
gaagagcaagagcgcaaggaactgcgagcttcgaaggcgaagaagcagacacagtctcca
tgggacttcgccaagtactcggaatcagtggcggaggaacacgctcgcaggagcacaaca
tctgttgacgagaaaatcactgcccttagacttcgttccacgccgctcattcatgccccc
gacccagaagaagataatagctctgaatccgaacctgatcaacaagaagattatagaccg
gaagaagaagaggaggaagagggcaatgctggtgataacaagccttattttgcttcttct
gatggaacctctttccatgctgattccttcatggagctcaatttgtctcgccctttactc
cgggcttgtgaggccttggggtattctaaaccaacaccaattcaggcggcttgtatacca
ttagcattatctgggcgtgacatatgtggaagtgccattaccgggtccggaaagacagct
gcgtttgcactacccactttagagaggttgttgtttcgtccaaaacgcatgcacgcaata
agggtccttattcttactccaaccagagagttggcagtccaagttcacagtatgattgag
aagcttgctcagtttactgatataaagtgctgcctgattgttgggggtttgtcaacaaag
gtgcaagaggttgccttgagatcaatgccagacattgttgtggctactcctggacgcatg
atagatcatttacgcaactctatgtcagtggatttggatgatctttctgttttaatcctt
gatgaggcagatcgtcttttagagcttggatttaatgctgaaattcatgaacttgttcgc
atgtgtcccaaaaaaaggcagaccatgctgttttcagcaaccatgactgaggagattaac
gaactcattaaactttccctgtcaaaacccttgcgtctttctgctgacccatctacaaaa
cgcccagcaactttgactgaagaggtggttagaatacgaagaatgcgggaagtaaatctg
gaagcagttcttcttgcaatgtgctccaaaacttttacttctaaagtgatcatcttcagt
ggaacgaagcaagctgcacatagattgaagattatatttggattagctggattaaaagct
gctgagcttcatggaaatcttactcaagcccaacgccttgaagctttggaacagttcagg
aaacagcaggtggattttttggtggcaactgatgtggctgctcgtggtcttgacattgtg
ggtgttcaaaccgttatcaactttgcatgtccacgcgatctcaccagctatgttcatcga
gtgggtcgtactgcaagagctggaagagaaggatacgctgtcacatttgttaccgataat
gaccggtcacttttaaaaggcattgcaaagagggctggtgcaaagctgaaaagccgcatt
gttgcagagcaatctatactaaagtggtctcaaataattgatcaaatggaggaccaaatt
gctgaagtacttcaagaagagagggaagaaatagccctaaggaaagctgaaatggaggcc
gcaaaggccgaaaacatgattgcacatagggaagagatcttttcccgccccaaaagaacc
tggtttgtcacagagaaggagaagaagcttgttgctaaagcagcaaaggactccatggat
acgggaaagagttccaggaaggaggtaattagtgcccaagaagctgaagacctcaaaatg
aaggaaaagaggaagcgagagcgagagaaaaatttgcctagaaagaagcgccgaaagttg
gaggcggctagagagatgttggaggacgatgagggttatgatgaaaagccagtcgaaggt
aagggggcaaataagaaagaaaaggctggaatatcacttgtcgatattgcttaccgacgg
gcaaaagcagtgaaggctgtcaagagggcactagattctggcaagattgtgaagaaggtt
aaaccgaaatctagtcattcttcgcgaaagactccttcaaggccagaagagatgcgcgat
ctattccagactgagataaaggatagaaaaccaagaaaaggaggtagtggagcaggaaag
aagcccaagagttcattcaaaagcaagtcaaggtataagcgcaagtag
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