Lotus japonicus: 130725423
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Entry
130725423 CDS
T04348
Name
(RefSeq) endoribonuclease Dicer homolog 3a isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
lja
Lotus japonicus
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lja03036
]
130725423
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
130725423
microRNA pathway
RISC loading complex
130725423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
ResIII
DEAD
Helicase_C
PAZ
SNF2-rel_dom
dsrm
DND1_DSRM
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
130725423
NCBI-ProteinID:
XP_057432638
LinkDB
All DBs
Position
1:85036577..85062816
Genome browser
AA seq
1672 aa
AA seq
DB search
MDDSSQHTKNPLKRTFDQLYTKPQDDDSPTFINIDPRRYQNEVFQVARKRNTIAVLDTGT
GKTLIAIMLIKDIAQAIKSSGKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYGRGVD
EWNLKTWEKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNATGNHPYARIMK
EFYHRANEKPMIFGMTASPVVKKGNSSTLDCEGQISELESILDSQRYTVEDRTEMDVCNP
SAKESCRFYDQARFPALSLKPKIEALWLKSDALLSEFQSNYKDVDSKFKTLHQRMSNDLA
KVLYCLEDLGLLCAYEAVKICHAKFSKIEGECEVYRKGYRQCITILEDVIQIIEESLNLA
DKMILDVESDYSNAVDKGYISPKLHELIKIFHTFGESNEVLCLIFVERIIAAKVIQRFVK
NVPQISHLTVSYLTGNHTSVDALAPTRQKEILDSFRSGKVNLLFTTDVLEEGINVPNCSC
VIRFDLPKTVRSYVQSRGRSRQANSQFILMLERGNLKQRNQHFEIIRTERFMTDAAINKV
HESNLRAFTVGNTNAYVVDSTGASVSLHSSLSLINQYCEKLPRDKYSCVKPTFESLPMEG
CYKCKLILPPNAAFQTIVGPSGKTARLAKNLVCLEACKKLHQMGALNDHLVPFTEEPSEA
HHIVKNKESSSGAGAGTTKRKELHGTASIRALCGAWGNKPEGANFNAYKFEFTCNIVSEI
YSGFVLLIESKLDDDVGNMELDLYLVSKIVKASVSSCGKVDLDAEQMMKAKCFHEFFFNG
LFGRLVSRSTSTPGERVFLLQEDTRSLWSPTNLYFLLPLEKLSDVCKGSLKIHWSGISSC
VSAVEFLRQKFSSVAGDCDNGSKVSSPCDTNSSNAESTNKIHFANCVLDLNDLREIVVLA
IHTGKVYCIIEAVMDLSAESPFDGNNDKSAEPITFSNYFLKRYGITLRHPGQPLLRLKQS
HNSHNLLFNFHEKDVGGKSSQTGPGASKVPVHVHVPPELLYIIDVKRDVLKSMYLLPSLM
HRIETLLLSSQLREEINDQASNLNISSSLILQALTTSRCCENFSMERLELLGDSVLKYVV
SCHLFLKYPENHEGKLTARRQQVICNATLHKLGTNRKLQGYILDSAFEPRRWVAPGQHSI
YPVPCDCGLETLEVPIDAKFRSEDPKVVVGKSCDRGHRWMCSKTIADCVESLIGAYFAGG
GLIASLHFMKWLGIDAELEPSLVEKAITVASLHTYVPKSNEITSLENKLGYEFSTKGVLL
EAITHLSEAELGNGCCYERLEFLGDSVLDVLITWHLYQSHTDIREGELTELRSASVNNEN
FAQVAVRKNLHMHLLHSSGLLLNQISEYAKVVSESENNTLLLLGIKAPKALGDLVESIAG
AILIDTKLSLDEVWKFFNPLLSPIVTPDNLELIPSRKLSRLCDSLGYFMKIKEKYDNKES
TEHVELSVQLPNALLVQKGKGPNKRIAKEQAAFHLLNDLEKWGLSYYSGMSKGKMDNHIH
IHDSSYVKNDFSISDEHSLKPAHKRIKLDETNLTAIPSTGCLPVNGSSSEASDVIASTPV
ISLTSMKKGEPRSKLNELCKKMQWPLPSFDPTEYKDRSQFGSCEALEGSKGQNCFVSTIT
MIMPNEGTIECRGEARSDKKSSYDSAAVKMLHELQRLGKLEIDNNPQQSCPV
NT seq
5019 nt
NT seq
+upstream
nt +downstream
nt
atggatgattcttcacaacacaccaagaatcctctcaagcgaacctttgatcaattatac
acaaagccacaagatgacgattctcccacattcatcaacattgatcccagaaggtatcag
aatgaggtatttcaagttgcaaggaagaggaacaccatagcagtgttggatacaggcact
gggaaaaccttgatagcaataatgcttataaaagacattgctcaagctatcaagtctagt
ggcaagaagaagttgattatagtcttggctccaatcgttcatcttgtacatcagctatac
aatgatttgaagcatcataccggttttcaagttgaggagtactatgggagaggagttgat
gaatggaatttaaagacctgggagaaggaggtttctgaaaatgatgtgctggttatgaca
ccccagattctcttgaatgccttaactaaagcatttctgaaagtagaaatgataagcttg
atggttatcgacgaatgtcataatgcaactggcaaccatccctatgcaagaataatgaag
gaattttatcaccgagctaatgagaagccaatgatttttgggatgacagcatcgccagta
gttaaaaaaggtaattcctctactttggattgtgagggtcagatatcagaacttgaaagc
atcttggattctcagagatatactgttgaagatcggacagagatggatgtatgtaaccct
tctgcaaaagagagttgtagattttacgaccaagcacgatttcctgctttaagtttgaag
ccaaaaattgaagccttgtggttgaagtctgatgcactattgtcagaatttcaaagtaac
tataaggatgtggacagcaaatttaagacactgcatcagcggatgtcaaatgaccttgca
aaagttttatattgcctcgaagatcttggactcttgtgtgcttatgaggctgttaaaatc
tgtcatgcgaagttctccaaaattgaaggagagtgtgaagtttaccgaaaaggttatcgt
cagtgtataactatcttagaagacgtaatccaaataattgaagaatccctcaatcttgcc
gataaaatgattttggatgtcgaatctgattactcaaatgcagtagacaagggatacatc
tcaccaaaattacatgaacttattaaaatcttccacacgtttggagaatccaatgaggtg
ttgtgcctcatttttgtcgaaagaatcattgcagcaaaggtgattcaaagatttgtgaag
aatgttccccaaatatctcatttaacagtttcctatttgactggaaaccatacatctgtt
gacgcactggctcctacgaggcagaaggagatattggattctttccgatctggaaaggtc
aatcttctatttactactgatgtacttgaggaaggaattaatgtgccaaactgctcatgt
gtgatacgttttgacctccccaagacagtccgcagttatgtccaatctcgaggaagatct
aggcaggctaactcccaatttattttgatgttggagaggggaaacttgaagcaaagaaat
caacactttgagataatcaggactgagcgcttcatgactgatgcagctattaacaaagtc
cacgagtctaatttaagggcgtttacagtagggaacacaaatgcatatgtcgtggattcc
actggagcatcagtcagtctacattctagtttaagtcttattaatcaatattgcgaaaag
ctcccacgagataagtactcttgtgtgaagccgacttttgagtctctgcctatggagggg
tgttacaagtgtaaattaatattgccacctaatgcagctttccaaacaatagttggtcct
tcaggaaaaactgctcgtttggcaaagaatcttgtatgtttagaagcttgtaagaagctg
catcaaatgggggccttaaatgatcatcttgtccccttcactgaagaaccttcagaggca
caccatattgtgaaaaacaaagaatctagttcaggtgcaggtgcaggaaccacaaaaaga
aaggagttacatggcacagccagcattcgtgcattatgtggtgcatggggaaacaaacct
gaaggagccaactttaatgcatataaatttgagttcacttgtaatattgttagtgaaatt
tattctggatttgttcttctgatcgagtcaaagcttgatgatgacgttgggaatatggaa
ttggatctttacttagtgtcgaagattgtgaaggcttctgtctcttcatgtggtaaagtt
gatttggatgctgaacagatgatgaaagcaaaatgcttccatgagtttttcttcaatggt
ttgttcgggagattggtttctaggtccacgtcaaccccaggggaaagggtgtttttactt
caggaagacacacggtcattgtggagcccaacaaacttgtattttcttctaccacttgag
aaattgagtgatgtatgtaagggatctttgaaaatacattggtctggaattagttcatgt
gtttctgctgttgaattcttaaggcagaaattttcgtcggttgccggagattgtgataat
ggcagcaaagtctcatcaccttgtgatacaaattcatcaaatgcagaaagcacaaacaag
attcactttgctaattgtgtgcttgatcttaatgatctgagagaaattgtagttttggcc
attcacactgggaaagtatattgcatcattgaagcagttatggacttatctgctgaaagt
ccttttgatggaaacaatgataagtctgcggaacccataactttctcgaattatttcctc
aaaaggtatgggattacactgagacatccaggacaacctttgctacggttgaagcaaagt
cataactctcacaatcttctttttaacttccatgagaaagatgttgggggcaagtcatca
caaactggtccgggagcctcaaaagtgcctgtgcatgttcacgtgccacctgagcttctg
tacattattgatgttaaaagagatgtcttgaagtcaatgtacttgctaccatctttgatg
caccgtattgaaactttattgttatccagtcagctcagggaagagataaatgatcaagct
agtaatttgaacatatctagctctttgattctacaagcactcacaacttcaagatgttgt
gaaaatttttcaatggaacggcttgaattgctaggagattctgttttgaaatatgtggtg
agctgccacctctttctaaagtatcctgagaatcatgaaggaaaattaactgccagacga
caacaggttatttgtaatgcaaccttacataaactgggaacaaatcgcaaattacaggga
tatatcttggactctgcatttgaacctcgccggtgggttgctcctgggcagcactctata
tatcctgttccttgtgattgtgggttggaaaccctagaagtgcctatagatgcaaaattc
cgttcagaagatccaaaagttgtggttggtaagtcctgtgataggggtcaccgctggatg
tgctcgaagactattgcggactgtgttgaatctttgataggagcatacttcgcaggtggt
ggactgattgcttcccttcatttcatgaaatggcttgggattgatgcagaacttgaacca
tccttggttgagaaagccatcacggttgcatcactgcatacatatgtgccaaaatcaaat
gagataacgagccttgaaaacaaacttggatatgaattttctaccaagggagtcctactg
gaggcaattacacatttgtctgaggcagaacttgggaatggctgctgttatgagaggctt
gaatttctgggtgactcagtattggatgtgcttatcacatggcatctttatcagagtcac
acagatattcgtgaaggagaattgactgaattgcgctctgcttctgtcaataatgaaaat
tttgctcaagttgctgttagaaaaaaccttcacatgcaccttttgcatagctcaggatta
ttactaaaccagatatctgaatatgcgaaggtcgtgtctgaatcagagaacaacacctta
ttacttcttggcattaaagctcccaaggcacttggagatctggtggaaagtattgctggg
gctatactaattgataccaagctcagtctcgacgaagtgtggaaatttttcaatcctctc
ttatctccaatagttactcctgataaccttgaactgattccatcacgtaaactaagtcga
ttatgtgactctcttggatactttatgaaaataaaagaaaaatatgataataaggaatcc
acggaacatgttgagctcagtgtccagcttccaaatgcccttttagttcaaaagggaaaa
ggaccaaataaaagaatagcaaaagaacaagctgcttttcatttgctgaatgatcttgag
aagtggggactttcatattacagtggcatgtccaagggaaaaatggataatcatatccat
atccatgattcatcttacgtcaaaaatgattttagtatttctgacgaacactccttaaag
ccagcacataaaagaatcaaattggatgaaactaacttaactgcaattccatctactggt
tgtttgcctgtcaatggctcttccagtgaagcctctgatgttattgcttcgactccagtt
atttcattaactagtatgaagaagggagaaccccggagcaaactcaatgaactgtgcaag
aaaatgcagtggccattgccttcttttgatccaacagagtataaagatagaagccaattt
ggatcctgtgaagcgcttgaaggaagtaaaggacaaaactgttttgtgtcgacaatcacc
atgatcatgcctaatgagggtacaatagaatgcagaggagaagctaggagtgataaaaag
agctcatatgactctgctgcagttaaaatgcttcatgagctacaacgactgggaaaactt
gagattgataataatccccaacaatcttgtcctgtataa
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integrated database retrieval system
