Lotus japonicus: 130726371
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Entry
130726371 CDS
T04348
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
lja
Lotus japonicus
Pathway
lja03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130726371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
130726371
03036 Chromosome and associated proteins [BR:
lja03036
]
130726371
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
130726371
Coactivators
SAGA/TFTC/STAGA complex
130726371
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
130726371
STAGA complex
130726371
TFTC complex
130726371
SAGA complex
130726371
SLIK complex
130726371
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_HPS5
Ge1_WD40
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Beta-prop_VPS8
Beta-prop_Nup120_160
PROPPIN
Beta-prop_DCAF12
Beta-prop_NWD2_C
PALB2_WD40
LisH
WD_LRWD1
Beta-prop_NOL10_N
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
130726371
NCBI-ProteinID:
XP_057433615
LinkDB
All DBs
Position
1:85773209..85782193
Genome browser
AA seq
665 aa
AA seq
DB search
MDEDEIVGYVTAYLKKKGFTQTEKVFQEEFQHNKNTTTTVEPDIANHLQALSQLETGPAR
FHDGYSGLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFFNAFREDHEM
MHLRDLQKLEGVLTPTHLEEMEFAHSLRQSKFNIKICEYSYELLLQHLHRTQSTTILGII
NEHINFQVSPGQPSLISDDPEAVTLSGSSQDAANRINQKEIHWGLLEDSIEERLEKAGAL
LSDSEKGDGEAKEGENDESKKRSIEVGKQGSSVKKVKKDKGGSATGKNAKPEVNTVPAAP
RVKPELSLPIISTEVEHSILDDLRNRVQLSSVALPSVSFYTFINTHNSLSCSSISHDGSL
VAGGFSDSSLKVWDMAKLGQQPTSSSQGENDTSQNEQVLGQSGGKRQYTLFQGHSGPVYA
ASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRT
ARVWSMDRIQPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQSGECVRVFVGH
RGMILALAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSMLAS
GSADSSVKLWDVNTSTKVSRTEEKSGNTNRLRSLKTLPTKSTPVSSLRFSRRNLLFAAGA
LAKNG
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagatgaaatcgtcggatacgtgactgcgtacttgaagaagaaagggtttacg
cagactgagaaggttttccaggaagagtttcagcacaacaagaacaccaccaccaccgtc
gaacctgacattgccaaccaccttcaagctctttctcaattggagactggtcctgctagg
tttcacgatggatatagcgggcttagaacatggacttactcttcactggatttgtacaag
catgagttgcttcgtgtgctttatccagtgtttatacattgctttatggatcttgttgca
aaagggcatattcaggaagctcggaattttttcaatgccttccgtgaagaccatgaaatg
atgcacttgcgtgaccttcagaagttggaaggggttcttactcctactcacctggaggaa
atggaatttgcgcattcacttaggcagagcaaattcaacatcaagatatgtgagtattcc
tatgagcttctgttgcaacatctacataggacacaatccaccactatacttggtataatc
aatgagcatatcaacttccaagttagccctggacaaccgagcttaatctctgatgatcct
gaggctgttacccttagtggaagcagccaggacgcagcaaaccggataaatcagaaagaa
atacattgggggctgcttgaagactctatagaagagcggctggagaaagctggagccttg
ctttcagactctgaaaagggtgatggagaagcaaaagaaggggagaatgatgagagtaag
aaaagatcaattgaagtcggaaagcaaggttcttctgtcaaaaaggtaaaaaaggacaag
ggtggaagtgcaacaggaaaaaatgcaaaacctgaagttaacactgtaccagcagctcct
cgagttaagccagaactttccttgcccataatttcaactgaggtagaacactccatcctt
gatgatctaaggaaccgtgtacaacttagtagtgttgcacttccatcggttagcttttac
acatttatcaatactcacaacagtttaagctgttcgtcgatatcccatgatggatcatta
gttgctgggggattttctgactcatcgctgaaggtttgggatatggcaaagcttggacaa
cagcccaccagttcttcacagggtgagaatgacacatcacaaaatgaacaagtgctcggg
caaagtggtgggaagagacagtatacattgtttcaaggtcattctgggcctgtttatgca
gcctcttttagtcctgttggggacttcattctttcatcatcagcagactcgacaattcga
ctctggagcacaaagcttaatgccaatcttgtttgttacaagggtcacaattaccctgtc
tgggatgttcagtttagtcccgtggggcattattttgccagctcttcacacgacagaact
gctagggtttggtccatggacaggatacagccattacgaataatggcagggcacttgtct
gatgtcgattgcgtgcaatggcatgtcaactgcaactacatcgcaactggctccagtgac
aaaactgttagactatgggatgtgcagagtggagagtgtgtccgagtttttgttggtcac
aggggtatgattttggctttggcaatgtctcctgacggtcgctatatggcatccggtgat
gaagatggcaccatcatgatgtgggacctctctagtggtcgctgtctcacacctttgatc
ggtcacacatcctgtgtctggtcactagctttcagttctgaaggttctatgctagcttct
ggatctgctgatagctctgtgaaattatgggatgtaaatacaagcactaaggtttctagg
actgaggaaaaaagtgggaatactaacagactcagatcgctgaaaactctgcctaccaaa
tctactcctgtttcgtctttgcggttttctcgaaggaatcttctttttgcagctggagct
cttgcaaaaaacggctaa
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