Lotus japonicus: 130727386
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Entry
130727386 CDS
T04348
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lja
Lotus japonicus
Pathway
lja03013
Nucleocytoplasmic transport
lja03015
mRNA surveillance pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130727386
09122 Translation
03013 Nucleocytoplasmic transport
130727386
03015 mRNA surveillance pathway
130727386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130727386
03041 Spliceosome [BR:
lja03041
]
130727386
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130727386
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130727386
Spliceosome [BR:
lja03041
]
Complex C
Other components
EJC/TREX
130727386
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130727386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
130727386
NCBI-ProteinID:
XP_057434487
LinkDB
All DBs
Position
1:86773967..86780407
Genome browser
AA seq
427 aa
AA seq
DB search
MAEIKDEGYEEELLDYEEEEDKALDSAGTKVNGEATKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILAL
TRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPIC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADVDVLNNVQSRFEVDIKQLPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaattaaggacgaaggatacgaggaagagcttctcgactacgaggaggaagaa
gacaaggccctcgactctgccggaacaaaagtcaacggtgaagctactaagaagggctat
gttggaatccacagttcaggattcagagactttcttctcaaaccagagcttcttagggct
attgtggactcgggatttgagcatccttctgaagtgcaacatgagtgcatccctcaagca
atccttggaatggatgtaatctgccaagctaaatctggaatggggaagactgctgtcttc
gttctctcgagtttgcaacagattgatcccgttccaggccaagtttctgcactggttctt
tgtcatacaagagagttagcttaccagatatgccacgagtttgagaggtttagcacctac
ttacctgacctcaaggttgctgtcttttatggtggggtcaacatcaaagttcacaaggat
ctgttgagaaatgagtgccctcatattgttgttggaacgcctggaagaatacttgcattg
actagggataaggacctttctttgaagaatgttaggcatttcattttagatgaatgcgat
aagatgctggaatcactagacatgaggaaagatgttcaagacattttcaagttgactccc
catgacaagcaagttatgatgttttctgcaacactcagcaaggaaatccgtccaatctgc
aagaaatttatgcaagatcctatggaaatttatgtcgatgatgaggccaagttaaccctt
catggacttgtgcagcactacatcaaactgaaagaggaggagaaaaaccggaagttgaat
gatcttcttgatgcactagactttaaccaagtagttatctttgtgaaaagtgtgagtaga
gcagctgagctggacaaactacttgtggagtgcaactttccatctatatgcattcattct
ggcatgtcccaggaagaaaggttaaagcgttataaaggtttcaaggaggggcatacaagg
attctggtggcaacagatttggttggtagggggattgacattgagcgagtcaatatcgtt
ataaattatgacatgcctgattctgctgacacatatttacacagggttggccgagctgga
agatttggcaccaaaggccttgcaatcacatttgtttcatgttctgctgacgtcgatgtt
ctaaacaatgtccagtcaaggtttgaggtggatataaagcagcttcctgagcagattgat
acctctacctacatgccatcgtag
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