Lotus japonicus: 130728186
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Entry
130728186 CDS
T04348
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
lja
Lotus japonicus
Pathway
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130728186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lja03041
]
130728186
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130728186
Spliceosome [BR:
lja03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
130728186
Complex C
U4/U6.U5 tri-SnRNP related factors
130728186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
T2SSE
PWI
SRP54
AAA_30
nSTAND3
AAA_16
Pim
AAA_7
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
130728186
NCBI-ProteinID:
XP_057435537
LinkDB
All DBs
Position
1:complement(97744653..97758758)
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AA seq
1052 aa
AA seq
DB search
MGSDENLKTWVSDKLMSVLGYSHPTIVQYMIGLSKQASSPSDLMRKLVNYNLSSSETGAF
AEEIFSRVPRSSSGSNQYWKQEREAAMLARRQKSYTILKDDDDNGDDVGGEDSGQDNPSK
LDSGKKRFRKKTEVQDDDEVISSKERKGERRVKRRVSISPDEEEILKDQREKEELEQHMR
VRDKARTRKLARKKEQEVIRRRSRVAEQDGIQSLRKVSRQEYLRKREEQKLEELRDDIED
EWYLFEGEKLTEAEYRELRYKKELYELLKKRIEEADDVDEYRMPEAYDQEGGVNQEKRFS
VAMQRYRDPNAEGKMNSFAEQEAWEKHQIGKGTLQYGSKNRRQVSDDYQFVFEDQIEFIK
ESVMDGDKFDYKETEDSLEKSRAKSALEALEEERKKLPIYSFRDELLQSVHDHQVLVIVG
ETGSGKTTQIPQYLHEAGYTKHGMIACTQPWRVAAMSVAARVSKEMGVKLGHEVGYSIRF
EDCTSEKTILKYMTDGMLLREFLGEPELESYSVLMVDEAHERTLSTDILFGLVKDISRHR
PELRLLISSATLDAAKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDAAIVTSLQIH
VNHPPGDILIFLTGQDEIETAEEILKHRTRCLGAKIAELIICPIYGNLPTELQAKIFEPT
PEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLSITPISKASANQRA
GRSGRTGPGKCFRLYTAYNFQNDMDDNTVPEIQRTNLANVVLTLKSLGIDNLLKFDFMDP
PPAEALLKAIELLFALSALNRVGELTKVGRRMAEFPLDPMLSKMIVASEKYQCSDDIISV
AALLSVGNSIFYRPKGKQVHADNARMNFHTGNVGDHIALLRMYNSWKENNYSRQWCYENY
IQVRSMKQARDIRDQLAGLLERVGIKLTSNPNDLNAIRKSITSGFFPHSAQLQKNGSYRT
VKLQQNVRIHPSSGVAQVFPRWVVYYELVLTTKEYMRQVTEIKPEWLVELAPHYYQLKDV
EDSTSKKIPVDKDVQNRSSKMIWEEEGKNVAP
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgggaagtgatgaaaatctgaagacatgggtatcggataaattgatgtctgtactggga
tattctcatcccacaattgtgcaatacatgattggattatccaagcaagcttcttcacca
tccgatttgatgcgcaaactagtgaactataacttgtcgtcaagcgaaactggagctttt
gctgaagaaattttctcgagggttccgcgtagttcatccggctcgaatcagtattggaaa
caagagcgagaagccgcaatgctagccaggaggcagaagagttacacaatcttgaaggat
gatgatgacaatggtgatgatgttggtggtgaagatagtggtcaagataaccctagtaag
ctagacagtggtaaaaaacgtttccggaagaaaaccgaagttcaagatgatgatgaggtg
atttcaagtaaggaaaggaagggagagcgacgggttaagagaagagtttcgatttcccct
gatgaagaagaaatattgaaagatcaaagagagaaggaggaattagagcaacacatgaga
gtaagagataaagcacgaaccaggaagttggcacgaaagaaggaacaagaggtgattcga
agaagatctcgagttgcggagcaggatggtattcaatctctgaggaaggtgtcaaggcaa
gaatacttgaggaagagggaggaacaaaaattagaagagctgagagatgatatagaagat
gagtggtatctatttgaaggtgagaagcttacagaagcagaatatcgtgagctgaggtac
aagaaagagctatatgaacttttgaagaagcggattgaggaggctgacgatgttgatgag
tataggatgccagaggcttatgatcaggaaggtggtgttaatcaggagaagagattttct
gtggctatgcagcgttaccgggatccaaatgctgagggtaagatgaattcatttgcagaa
caagaggcatgggagaaacatcaaattggtaagggaacgctccagtatggttcaaaaaat
agaagacaagtctctgatgattatcagtttgtgtttgaggaccaaattgaatttatcaag
gaatcggtgatggatggagataagtttgattataaagagacagaagattcacttgaaaag
tccagagcaaagtcagctttagaggcacttgaggaggagaggaaaaagttaccaatttac
agttttcgggatgaattgcttcaatccgttcatgatcaccaggtacttgtaattgttggt
gaaactggttctggaaagactacacagattccccaatatcttcatgaagctggctacaca
aagcatggaatgattgcatgtactcagccatggcgtgttgctgcgatgagtgttgctgct
cgagtttctaaagaaatgggtgttaaactaggacatgaggttggttactccatccgtttt
gaggattgcacatcagagaagactattctgaaatatatgacagatggaatgttgctgagg
gaattccttggtgagcctgagctggaaagttatagtgttctgatggtggatgaggctcat
gaaagaacactctcaactgatattttgtttggattagtaaaggatatttctcgtcaccgg
cctgaacttaggttgctaatatcaagtgcaacccttgatgcagcaaagttcagtgactac
tttgattctgctcctatattcaaaattccagggagaaggtatcctgttgaaataaacttt
accaaagcaccagaagctgactacttagatgcagctattgtcacatcacttcaaattcat
gtcaatcaccctcctggagatattttgatattccttactggtcaagatgaaattgaaact
gctgaagaaatcttgaaacatcgcactagatgcttgggggctaaaattgcggaattgata
atatgccccatatatggcaacctaccaactgaactacaagctaaaatatttgaacccact
cctgaaggggcgcgaaaggttgtccttgctaccaatattgcagaaacgtcattaacaatt
gatgggatcaagtatgtcattgatccaggattctgtaagatgaaaagttataatccaaga
actggtatggagtctttgtcaataactcccatctcaaaggcttcagcaaatcaaagagct
ggtcgttccggaagaacaggtcctggaaagtgcttccggttatacactgcgtacaatttt
caaaatgatatggatgataacactgtacccgaaatacagcgaactaaccttgcaaatgtg
gttttgactttaaaaagtcttggaattgataacttgttaaagtttgattttatggatcct
ccaccagctgaggccttattgaaagccatcgaacttctatttgctttaagtgcgttaaat
agagttggtgagttaactaaggtaggtagacggatggcagagttcccacttgatcctatg
ttgtcaaaaatgattgttgcttcagaaaagtaccagtgttcagatgatatcatttccgtt
gctgccctgctttctgttggcaactcaatattttaccgcccaaagggtaaacaagtacat
gctgacaatgcgaggatgaattttcacacaggaaatgtcggagaccatattgcattgcta
agaatgtacaattcatggaaagagaacaattattcaagacaatggtgttatgagaattat
atacaggtaagaagtatgaaacaggctagggatatccgtgatcaacttgcaggtttgtta
gagagggttggcatcaaactcacttcaaatcctaacgatttaaacgccatcaggaaatcc
ataacatctgggtttttcccacactctgcacaactgcaaaagaatggatcatatcggact
gtaaaacttcaacagaatgttcgcatacatcctagttctggggtggcacaggtttttcct
agatgggttgtatactatgaattagtactcacaacaaaggagtacatgagacaggtcaca
gaaataaagccagagtggttggtggagctagccccccactattaccagcttaaagatgtt
gaagactctacttccaagaaaattcctgtggacaaggacgtgcaaaatagatcttcgaag
atgatttgggaggaggagggaaaaaatgtggccccttga
DBGET
integrated database retrieval system
