Lotus japonicus: 130728243
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Entry
130728243 CDS
T04348
Name
(RefSeq) exosome complex exonuclease RRP46 homolog
KO
K12590
exosome complex component RRP46
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130728243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130728243
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
130728243
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
130728243
NCBI-ProteinID:
XP_057435614
LinkDB
All DBs
Position
1:98441743..98445292
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AA seq
243 aa
AA seq
DB search
MESDRPDGRSPNQLRPLACSRSVLHRAHGSATWSQGETKVFAAVYGPKAGTKKNENPEKA
SIEVIWKPNTGQIGQVEKEYEMILKRTLESICIRSIYPNTTTSVIVQVVHDDGALLPCAI
NAACAALVDAGIPLKHLAVAICCSVADNSCIILDPTKQEEETATAFAYLVFPNTNVSVLP
EGSSQGGSEPMAHGIITSVTQGAMSVDDYLRCLERGRATSERLSEFLRKNIEPKSTSEAS
KAG
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atggagagtgacagacccgatgggaggagtcccaatcaactaaggcccttggcatgctct
cgttcggtccttcacagagcccatggttcagccacctggtctcaaggagaaaccaaagtc
tttgctgcagtttacggacccaaagccggaaccaagaagaatgaaaaccctgaaaaagct
tccattgaagttatttggaagcctaacacaggacagattggtcaagtggagaaggagtat
gagatgatattgaagagaaccttggaaagcatatgcattcgaagcatatatcccaacacc
accacttccgttatagtccaggttgtccatgatgatggtgctcttcttccgtgcgcgata
aatgcagcatgcgctgcacttgttgatgctggaatccccctaaaacatcttgctgttgca
atatgttgttcggtagccgataatagttgtattatactcgacccaactaaacaagaagag
gaaacagcgacagcattcgcctatttagtttttccaaacacaaatgtttcagtcctacca
gagggatcatcacaggggggcagcgagcccatggcacatggaatcatcacatctgttaca
cagggtgctatgtcagtggatgactatcttcgttgcctagaacgagggcgtgctactagt
gaaaggttgtctgaatttttgaggaagaacattgagccaaaatctacaagtgaggcatct
aaagctgggtga
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