KEGG   Lotus japonicus: 130728671
Entry
130728671         CDS       T04348                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
lja  Lotus japonicus
Brite
KEGG Orthology (KO) [BR:lja00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:lja03009]
    130728671
Ribosome biogenesis [BR:lja03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    130728671
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd EIF3I WDR55 Beta-prop_EML Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_HPS5 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st Beta-prop_IP5PC_F Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_VPS8 Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_LRRK2 WDR54 Beta-prop_WDR75_2nd PEP5_VPS11_N Beta-prop_DCAF12 PROPPIN DUF4987
Other DBs
NCBI-GeneID: 130728671
NCBI-ProteinID: XP_057436186
LinkDB
Position
1:104333221..104338332
AA seq 448 aa
MEVVLASSSVDGGIGCWDLQTGAEQLRYKSCSSPSHGLVSVGGRFLASSQIRDPSASSGS
VSKLYFWSWSKPQVEVRSFPAEPIMPLAANHPGTYLAGGASSGDIYFWQVETGRLLKKWH
AHYRAVTCLVFSEDDSLLISGSEDGSVRVWSLIKIFDDLGSFEAKNLYLHSFTEHTLCVT
DVVIGYGGCNAIIVSASEDRTCKVWSLATGTLLRNIVFPSIIDAIVLDPAEHIFYAGSRD
GKIFIAALNTERIPTNNYGMHIIGSFSNHSKAVTCLAYGAAGNLLISGSEDGMVRVWNAR
TCNIIRMFKHAKGPVNNILVVKQEIDPSNHMSSTVEASSRKKGAYLSPPLEKYTNSADED
SYIKVSLRGGATDVKYLSSGMISKYAKELQHQGSAAASEMEVEKLKHDCQRSMQMANQFK
KMYEDLIQFYVKELLDGGQARTLDENGK
NT seq 1347 nt   +upstreamnt  +downstreamnt
atggaggttgttttggcatcttcctctgttgatggtgggataggctgttgggaccttcag
acaggtgctgaacagctccgttacaagtcgtgttcctccccttctcatggtcttgtctct
gttggtggtcgcttccttgcatcttctcagattagagacccatcggcttcctccggttct
gtttcgaaattatatttctggtcctggtccaagcctcaagttgaagttaggagctttcct
gctgaacccattatgccccttgctgcgaatcacccgggcacctatctagctggtggggct
tcgtcaggtgatatatacttttggcaggtcgaaactggcagattgcttaaaaagtggcat
gctcactatagggctgtgacatgcctggtattttctgaagatgactccctgctgatatct
ggttctgaagatggatctgtcagagtttggtctctcatcaagatatttgatgatttggga
agctttgaagccaaaaatctttatctacacagttttacagagcacactctgtgtgtgact
gatgttgtgattggttatggtgggtgcaatgcaattatagtgtcagcttcagaggaccgg
acctgtaaggtgtggagcttagctacgggaactctactaagaaacatagtattcccttca
ataattgatgcaattgtcttggatcctgctgaacatatcttttatgctggcagtagagat
ggaaaaatatttattgctgcacttaacactgaaagaatccctactaataattatgggatg
catatcattggttcattttctaaccacagcaaggcagttacttgcttagcatatggcgcc
gctgggaatttgttaatatctgggtcagaggatggaatggttcgtgtttggaatgcaaga
acttgtaacatcatccgcatgtttaaacatgctaaaggaccagtaaataatattcttgtt
gttaaacaagaaattgacccaagtaatcatatgtcttctactgtagaagcatcctcaaga
aagaaaggggcttatttatcccctccattagaaaaatatacaaattctgcagatgaagac
tcatatataaaggtcagcctcaggggtggcgcgacagatgttaaatatctcagttctgga
atgatatctaagtatgctaaggaacttcagcatcaaggttcagctgctgcttctgaaatg
gaggtggagaagctaaaacatgattgccaaaggtcaatgcaaatggcaaatcaatttaag
aaaatgtatgaagatttgatacagttttatgtgaaggagctgttagatggaggtcaagca
agaaccttagatgaaaatggtaaataa

DBGET integrated database retrieval system