Lotus japonicus: 130728854
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Entry
130728854 CDS
T04348
Name
(RefSeq) transcription initiation factor TFIID subunit 6
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
lja
Lotus japonicus
Pathway
lja03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130728854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lja03021
]
130728854
03036 Chromosome and associated proteins [BR:
lja03036
]
130728854
Transcription machinery [BR:
lja03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
130728854
Coactivators
SAGA/TFTC/STAGA complex
130728854
Chromosome and associated proteins [BR:
lja03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
130728854
STAGA complex
130728854
TFTC complex
130728854
SAGA complex
130728854
SLIK complex
130728854
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
CBFD_NFYB_HMF
Motif
Other DBs
NCBI-GeneID:
130728854
NCBI-ProteinID:
XP_057436421
LinkDB
All DBs
Position
1:106795661..106802296
Genome browser
AA seq
544 aa
AA seq
DB search
MSIVPKETVEVIAQSIGINTLSPDVALAVAPDVEYRMRQIMQEAIKCMRHSRRTTLTVDD
VDAALNLKNVEPIYGFASGGPLRFKRAVGHRDLFYIDDKDVDLKDVIEAPLPKAPLDTAI
TCHWLAIEGVQPAIPENAPIEVISAPPDVKKPDQNNDGLPVDIKLPVKHVLSRELQLYFD
KVTELTLNESDSVLFKEALVSLATDSGLHPLVPYFTCFIADEVSHSLNNFPRLFALMRVV
SRLLQNPHIHIEPYLHQLMPSIVTCLVAKRLGSRLSDNHWELRDFTANLVASICKKFGHV
YSNLQSRLTKTLLNAFLDPKKALTQHYGAIQGLGALGPNVVRLLLLPNLETYIRLLEPEM
QLEKQKNEIKRHEAWRVYGALLRAAGQCIYDRLKMFPTLPSPLPQAVWKTNARVLTSSTL
KRKASHEQLEEQPPLKKSATDGEADVIMTNSSPSHKQGETGTQDSSVDSIAAASTSSRQM
KNETTLDGEVKSNKVDTQALKISAALTQVWKDELNSGRTLASLFELFGEAILPFIKAPEM
YVFL
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgagcattgttcccaaagagaccgtggaggttattgcacagagtattgggattaacacc
ttgtctcccgatgttgctcttgctgttgctcctgatgttgagtaccgtatgcgtcagatt
atgcaggaagcaatcaagtgcatgcggcattctaggagaaccactttgacagtagatgat
gttgatgctgcactcaacttgaagaatgttgaaccaatatatggatttgcatctggcggt
cctttacggttcaaaagagctgttggacatagagatttattttacattgatgacaaggat
gtagacttaaaagatgtcattgaagctcctttaccaaaagcaccccttgatactgcaatt
acgtgccactggcttgccattgaaggtgtgcaacctgctattccggaaaatgctcctata
gaggtaatttcagctcctcctgatgtaaaaaagcctgatcagaacaatgatggacttcca
gttgacatcaagttacctgttaagcatgtattatctagagagcttcagctgtattttgat
aaagtgactgaactaactttaaatgagtcggattcagttctatttaaagaagcattagta
agtttggctactgattcaggactacatccattagttccttatttcacatgctttatagct
gatgaggtttctcacagcttgaataattttcctcgtctatttgccttgatgcgagttgtt
agtaggcttctgcaaaaccctcatatccatattgaaccttatctacaccagttgatgcct
tctattgtgacctgccttgttgctaaaaggttgggcagtagattgtcagacaaccattgg
gaacttagagacttcacagctaatctggtagcctcaatatgtaaaaagtttggacatgtt
tatagcaatctacagtcccggttgacaaaaacattgctgaatgcattcttggatcccaag
aaggcattgacgcaacactatggagcaattcaggggttaggagcactgggacctaatgtg
gttcgccttcttttgctaccaaatcttgaaacatatataagacttcttgaaccagagatg
cagctcgagaagcagaaaaatgaaataaaaaggcatgaagcttggcgtgtttatggagcc
ttgctgcgtgctgcaggtcagtgtatatatgatcgactcaagatgttccctacattacca
tctcctctccctcaagctgtctggaagaccaatgctagagttcttacctcttcaactctt
aaacgcaaggcaagccatgagcaattggaagagcagccccctttaaagaaatctgctact
gatggtgaagctgatgtaattatgacaaattcgtcaccgtctcacaagcaaggggagaca
gggactcaagattcttcagttgattcaatagcagccgcatcaacatcttctaggcagatg
aaaaatgagaccactttagatggcgaagttaaaagtaacaaggtagatactcaggcattg
aagatatctgctgccctcacccaggtttggaaggatgagctgaattcaggacgtaccctg
gcgtcactgtttgagttgtttggtgaagccattcttcccttcattaaggctcctgagatg
tacgtgttcctgtaa
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