Lotus japonicus: 130729020
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Entry
130729020 CDS
T04348
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130729020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130729020
03041 Spliceosome [BR:
lja03041
]
130729020
03009 Ribosome biogenesis [BR:
lja03009
]
130729020
03016 Transfer RNA biogenesis [BR:
lja03016
]
130729020
Enzymes [BR:
lja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130729020
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
130729020
Spliceosome [BR:
lja03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
130729020
Complex C
U4/U6.U5 tri-SnRNP related factors
130729020
Ribosome biogenesis [BR:
lja03009
]
Eukaryotic type
Pre-60S particles
Helicases
130729020
Transfer RNA biogenesis [BR:
lja03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
130729020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
130729020
NCBI-ProteinID:
XP_057436615
LinkDB
All DBs
Position
1:108547120..108557936
Genome browser
AA seq
986 aa
AA seq
DB search
MGSLKRKSPEEPTTQLQRGEELQYDCVHDVSYPHGYIHPPPPSSSSSSSSSSTHTEPAKK
FPFTLDPFQSQAITCIENGESVMVSAHTSAGKTVVALYAIAMSLRDGQRVIYTSPIKALS
NQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEITREVAWIIFDEVH
YMRDRERGVVWEESIVMSPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTP
LQHYIFPSGGDGLYLVVDEKGKFREDSFQKSLNALVPPSEGDRKKDNGKFHKGLMLGKVG
EESDIFKIVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNGDDEKDNIEKIFWSAMD
MLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGL
NMPAKTVVFTNVRKFDGDKFRWITSGEYIQMSGRAGRRGIDERGICILMVDEKLEPSTAK
MMVKGAADSLNSAFHLSYNMLLNQMRCEDGDPENLLRNSFYQFQADRAIPDHEKQIKALE
EERESIVIEEENSLKDYYHLLEQHRSLNKEVRDIVLSPRHCLPFLQPGRLVSLQCTSSDD
DPPIIIEDQLTWGLVINFERVKSVSEDDVSIKPEDASYNVDILTRCMVSKDKIGKKSVKI
VPLKEVGEPLVVSVPISQINTISSLRLYIPKDLLSLETRQNTLKKVLETLSRFGEKGLPL
LDPEEDMKIQSNSYKKASRRIEALESLFEKHEIAKSPLIKQKLKVLQRKQELTARIKSIK
KTIRSSTVLAFKDELKARKRVLRRLGYATSDNVVELKGKVACEISSADELILTELMFSGV
LKDIKVEEMVSLLSCLVWREKIHDGAKPREELDLLFAQLQDTARRVAQLQLECKVEIDVE
SFVKSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIEAAKSIGE
TQLETKFEEAVSKIKRDIVFAASLYL
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atggggtcactcaagaggaaatcaccagaagaaccaacaacacagttacagaggggggag
gaactgcaatatgactgtgtacatgacgtctcctacccacacggttacattcatcctcct
cctccttcttcttcttcttcttcttcttcttcttcaactcacactgagcctgctaagaag
ttcccttttaccctcgacccctttcagtcccaagctattacctgcatcgaaaacggcgaa
tccgtcatggtgtctgcacacacatctgctgggaaaactgttgtcgctttatatgctatt
gccatgtcacttcgagacggacagcgtgttatctacacttctcctatcaaggcgcttagc
aatcagaagtacagagagttcaaggaagagttctctgatgttggtttgatgactggagat
gtcaccattgaccccaatgcttcttgcttggtgatgaccacggagatctggcgtagcatg
caatacaaagggtccgagatcaccagagaggtggcttggatcatttttgatgaagtgcat
tacatgcgagatcgcgagaggggcgtggtttgggaagagagtattgttatgtcgccaaag
aattcccgttttgtcttcctgtctgccacggtccctaatgcaaaggagtttgcggattgg
gtggcaaaggtgcaccaacagccgtgtcacatagtttatactgattaccgacctactcct
cttcagcattatattttcccttctggaggtgatggtctatatttggttgtggatgagaag
ggaaaatttcgtgaagacagctttcagaaatctttaaatgctcttgttcctccgagtgag
ggtgataggaaaaaagacaatggcaaatttcataaaggtttgatgctgggaaaggttggt
gaggagagtgacattttcaagatagtgaaaatgatcattcagcgtcaatatgatcccgtc
atactgttcagctttagcaaaagggagtgtgaatttctcgcaatgcagatggcaaaaatg
gatctgaatggggacgatgagaaggacaacatagaaaaaatattttggagtgctatggat
atgctttcagatgatgataagaagcttcctcaggtttcaaacatgctgcccttgttgaaa
cgtggaataggagtccatcactctggtttacttccaattctaaaggaagtgattgagatc
ttatttcaagaagggctaatcaagtgtttgtttgctacagagaccttcagcattggtttg
aacatgcctgcaaaaactgttgtatttacaaatgtccgaaaatttgatggggacaagttc
agatggattaccagtggagaatatatccaaatgagtggccgtgcgggtcgacgaggtatt
gatgaacgcggaatatgtatcctcatggtcgatgagaagttggagccttctactgctaaa
atgatggttaaaggggcagctgatagtttaaacagtgcctttcatttaagctacaacatg
cttttgaatcaaatgcgttgtgaagatggtgatcctgagaatttgctccgtaattccttt
tatcagtttcaagctgatcgtgccattcctgatcatgagaaacaaataaaggctcttgaa
gaagagcgggaatcaattgttattgaggaagaaaacagcttgaaggattattaccatctg
ctggagcagcatagaagtttgaataaagaggttcgcgacattgtgttatctccaaggcac
tgtttacctttcttacagcctgggaggcttgtttctcttcaatgcacttcaagtgatgac
gatcctcctattattattgaggaccagttgacatgggggttggtcattaattttgaaagg
gttaaaagtgtttctgaagatgatgtaagtattaaaccagaggacgcatcttacaatgtt
gatattcttacaagatgtatggtgagcaaggataaaattgggaaaaaatctgttaagatt
gttcctctgaaagaagttggagaacctctagtggtttcagttccaatctctcagattaat
acaattagcagtttgcggttatatataccaaaggatcttttgtcattggaaactcggcaa
aacacgctgaaaaaagtgctggaaactctttctagattcggtgagaaaggattgccactt
ctagatcctgaagaagacatgaagattcaaagcaactcatacaaaaaagcatctcgtagg
atagaggctttggagagcctatttgaaaagcatgaaattgcgaagtcaccacttataaag
cagaagttaaaggttttacagaggaagcaagaactgactgcaaggataaagtccattaag
aaaacaataagatcttctactgttttagccttcaaggatgaacttaaggcaagaaagagg
gttcttcgcaggctaggatatgctacaagtgacaatgtggtggaattgaaagggaaggtt
gcttgtgaaattagtagtgcagatgaactgatcttaacagaactaatgttcagtggtgtg
ttaaaggacataaaggttgaggaaatggtttctctcctctcttgtttggtctggcgagaa
aaaattcatgacggtgccaagcctcgggaggaacttgatctgctttttgcacaattacaa
gacactgctcggagagttgcccaacttcagcttgaatgcaaggtggaaattgatgttgag
agcttcgtgaaatcgtttaggcctgatattatggaggctgtgtatgcgtgggcgaaaggt
tcgaagttttatgagatcatggaaattacacaggtctttgaaggcagcttgattagagca
attagaagacttgaggaagttcttcagcagttaatagaagcagccaagtcaattggagag
actcaacttgagacaaagtttgaagaggctgtgtccaagatcaagagggatattgtcttc
gcagcatccttgtatttgtaa
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